Non-Coding RNA Search

Ss1.1-rret28_n2.5

Sequence:


               
               TCTTGGTGGAAATAGGCATTGTTTTAAATATTGAAAATATAATGCCTGTTCTATATAGAA
ACAAGAGTTTGGCTTAATTGGTATAAGAATCTGAATCCCAGAGTGTCTGTTGTGTCTCAT
CTGGATTGGTGGCATGTGTGCAGAGCCAGGACACAGGTTCAGTCCCTGGCCTGACACAGT
AGGTTTAAGGATCTGGGATTGCCACAGCTTCAGCATGGATCGAAGTTTTGTGGCTGGGAT
CTGGCTCAGGATCCCAGACTCAGGAAATCCATATGCCACAGAATGGCCAAAAAAGGAAAA
AAAAAAAAATCTAAATCCAAATCATACACTGTAAAATGCTATCAAAGAGGGACAAGAAAG
TGTTTTTTATTGCTTTAAAAAATGTTTACCATATATGCAGTTTAAAAGAGAAGGCTCATC
CTTGGATATGTAACATATCCAAAAGTTGTTACAGTTTTCTAGTCTGCTGTGATCCATTTA
AAATGTGCTGGGGTTTGTTCTGCTGTTACTACTGTTCACGCTGCTGATGCTAATAGTTCT
ATCTTGATTTGAAGAATATTGTTGAGGGCCATTGAAAACGGTCTTTCATTAATGCAGATA
AAATCAGTTTACATGTGCAAAGTTACAAAATGGCGTATGTGATTCTGTAAGTAGTGACTC
CTTGATCACCTTTTTAATATTATGTATTTCTAAAAACCATTGCTTTTGGATATGGTTGAC
ATTAAGCACTTTACAAAAGAAAAGGCAGCCTTTACTATTTTTCTGGTTGAGTCATTGCTT
TCTAGAAGTAGCATCAGCAATAGATTTAAAAAATAAGTATTAAGCACTACACTAAAGTGT
GTAAATGTTTCATTTTTTAAAGTCATATTGAAAAATTCTTTGCATAGTTCCAGATTCTTC
AACTCATAGCATATGTGTGTGCACAAGAACATCTTTAGTTTTTCGACATTTTGAAATAAA
GGAAGTAGCTTAAGGAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTTGGTGGAAATAGGCATTGTTTTAAATATTGAAAATATAATGCCTGTTCTATATAGAA
ACAAGAGTTTGGCTTAATTGGTATAAGAATCTGAATCCCAGAGTGTCTGTTGTGTCTCAT
CTGGATTGGTGGCATGTGTGCAGAGCCAGGACACAGGTTCAGTCCCTGGCCTGACACAGT
AGGTTTAAGGATCTGGGATTGCCACAGCTTCAGCATGGATCGAAGTTTTGTGGCTGGGAT
CTGGCTCAGGATCCCAGACTCAGGAAATCCATATGCCACAGAATGGCCAAAAAAGGAAAA
AAAAAAAAATCTAAATCCAAATCATACACTGTAAAATGCTATCAAAGAGGGACAAGAAAG
TGTTTTTTATTGCTTTAAAAAATGTTTACCATATATGCAGTTTAAAAGAGAAGGCTCATC
CTTGGATATGTAACATATCCAAAAGTTGTTACAGTTTTCTAGTCTGCTGTGATCCATTTA
AAATGTGCTGGGGTTTGTTCTGCTGTTACTACTGTTCACGCTGCTGATGCTAATAGTTCT
ATCTTGATTTGAAGAATATTGTTGAGGGCCATTGAAAACGGTCTTTCATTAATGCAGATA
AAATCAGTTTACATGTGCAAAGTTACAAAATGGCGTATGTGATTCTGTAAGTAGTGACTC
CTTGATCACCTTTTTAATATTATGTATTTCTAAAAACCATTGCTTTTGGATATGGTTGAC
ATTAAGCACTTTACAAAAGAAAAGGCAGCCTTTACTATTTTTCTGGTTGAGTCATTGCTT
TCTAGAAGTAGCATCAGCAATAGATTTAAAAAATAAGTATTAAGCACTACACTAAAGTGT
GTAAATGTTTCATTTTTTAAAGTCATATTGAAAAATTCTTTGCATAGTTCCAGATTCTTC
AACTCATAGCATATGTGTGTGCACAAGAACATCTTTAGTTTTTCGACATTTTGAAATAAA
GGAAGTAGCTTAAGGAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               305-978, gnl|bosTau2|chr11 (84844117-84843449)
               

               
               305-978, gnl|Hg17|chr6 (108471367-108470721)
               

               
               305-978, gnl|Mm7|chr10 (42512203-42512800)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               305-978, gnl|bosTau2|chr11 (84844117-84843449)
               

               
               305-978, gnl|Hg17|chr6 (108471367-108470721)
               

               
               305-978, gnl|Mm7|chr10 (42512203-42512800)

Expressed library(ies): 14 entry(ies)

More info

Expressed library(ies): 14 entry(ies)

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               ret (0.3862)
               

               
               lin (0.291206)
               

               
               tra (0.246184)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               fty (0.17584)
               

               
               cut (0.169924)
               

               
               isp (0.150376)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               pla (0.133672)
               

               
               thg (0.126791)
               

               
               pgl (0.118483)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.3862)
               

               
               lin (0.291206)
               

               
               tra (0.246184)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               fty (0.17584)
               

               
               cut (0.169924)
               

               
               isp (0.150376)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               pla (0.133672)
               

               
               thg (0.126791)
               

               
               pgl (0.118483)

	305-978, gnl\|bosTau2\|chr11 (84844117-84843449)
	305-978, gnl\|Hg17\|chr6 (108471367-108470721)
	305-978, gnl\|Mm7\|chr10 (42512203-42512800)

	ret (0.3862)
	lin (0.291206)
	tra (0.246184)
	sag (0.182715)
	mgm (0.180343)
	fty (0.17584)
	cut (0.169924)
	isp (0.150376)
	spl (0.143184)
	lnt (0.142308)
	csk (0.140746)
	pla (0.133672)
	thg (0.126791)
	pgl (0.118483)