Non-Coding RNA Search

Ss1.1-rret28_n20.5

Sequence:


               
               GATTTTATAGGGTTAGCCAAAGTTATGGCTCCCTTCTTAACTGTAATTCCACTATTCCAT
ATTCAACGGCATTTGTTGCTAATGATTAATTGTTTCATTCACTTGGCCATTATATTAGAA
TGACCACAACATTCAGATTTATACAATAGCGAACTTTGCAAACCTGAATTGGGTAGAGAT
ATGGAATCTCTATATTTCCAGTGTAGAATAGTTCTTTCCAGACATTTTATGTCAGGGGGA
CACTGGTCAAATTATTATGGCTTTAAATAGCACTCCCAGAAATTAAAAAAAAAAAAACAA
CTTTTATACATGCAACCAAACATTCCTACATTTAAAGACATTTTTAAAAAATCACAGGTG
ACTCATCTGGTCATTTTATATATTGATAAATATTATGACATATATGTGAACACATCAAGA
ATCATATAGGTGTACCAAGAGGCAATTTCTGCCTCTCTTAAGTATGTACTGACATAACCT
AATATACTAAAATGGGAAGGGGCGTTTAGTCACTGAAATATGCATCGTGTAACAAAGATG
AAGAAAATACATGGCTTGTGCCCATCATAAAAAAAGATTCAGACTGAAGGCTTAGCTTTG
GTTTTTATTCAATTAAATTGTTAAACTGTGCACAGTGATTTTTTTTAGAACTTGAGACAT
TTGTGATGTTGGCTGTTTAAATCTTTGTTACCTTCGCTGTGAATTGAAATTGTACATATT
TAGTAAATCATGCAGACAAAACAAACTTTTTAGACAATATTTTTATTGGAGAGTTTTCTT
TTCCTGTATCCATGTTAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATTTTATAGGGTTAGCCAAAGTTATGGCTCCCTTCTTAACTGTAATTCCACTATTCCAT
ATTCAACGGCATTTGTTGCTAATGATTAATTGTTTCATTCACTTGGCCATTATATTAGAA
TGACCACAACATTCAGATTTATACAATAGCGAACTTTGCAAACCTGAATTGGGTAGAGAT
ATGGAATCTCTATATTTCCAGTGTAGAATAGTTCTTTCCAGACATTTTATGTCAGGGGGA
CACTGGTCAAATTATTATGGCTTTAAATAGCACTCCCAGAAATTAAAAAAAAAAAAACAA
CTTTTATACATGCAACCAAACATTCCTACATTTAAAGACATTTTTAAAAAATCACAGGTG
ACTCATCTGGTCATTTTATATATTGATAAATATTATGACATATATGTGAACACATCAAGA
ATCATATAGGTGTACCAAGAGGCAATTTCTGCCTCTCTTAAGTATGTACTGACATAACCT
AATATACTAAAATGGGAAGGGGCGTTTAGTCACTGAAATATGCATCGTGTAACAAAGATG
AAGAAAATACATGGCTTGTGCCCATCATAAAAAAAGATTCAGACTGAAGGCTTAGCTTTG
GTTTTTATTCAATTAAATTGTTAAACTGTGCACAGTGATTTTTTTTAGAACTTGAGACAT
TTGTGATGTTGGCTGTTTAAATCTTTGTTACCTTCGCTGTGAATTGAAATTGTACATATT
TAGTAAATCATGCAGACAAAACAAACTTTTTAGACAATATTTTTATTGGAGAGTTTTCTT
TTCCTGTATCCATGTTAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               81-197, - strand, RNAz p=0.65917
               

               
               358-637, + strand, RNAz p=0.974004

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               81-197, - strand, RNAz p=0.65917
               

               
               358-637, + strand, RNAz p=0.974004

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-804, gnl|bosTau2|chr2 (35497306-35496513)
               

               
               1-804, gnl|Hg17|chr2 (144976667-144975910)
               

               
               1-804, gnl|Mm7|chr2 (44991849-44991061)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-804, gnl|bosTau2|chr2 (35497306-35496513)
               

               
               1-804, gnl|Hg17|chr2 (144976667-144975910)
               

               
               1-804, gnl|Mm7|chr2 (44991849-44991061)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               ret (0.3862)
               

               
               mgp (0.230681)
               

               
               fcc (0.197785)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               tra (0.123092)
               

               
               jca (0.11396)

Expressed library(ies): 11 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.3862)
               

               
               mgp (0.230681)
               

               
               fcc (0.197785)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               tra (0.123092)
               

               
               jca (0.11396)

	81-197, - strand, RNAz p=0.65917
	358-637, + strand, RNAz p=0.974004

	1-804, gnl\|bosTau2\|chr2 (35497306-35496513)
	1-804, gnl\|Hg17\|chr2 (144976667-144975910)
	1-804, gnl\|Mm7\|chr2 (44991849-44991061)

	ret (0.3862)
	mgp (0.230681)
	fcc (0.197785)
	lun (0.150489)
	ski (0.146735)
	spl (0.143184)
	hyp (0.142837)
	ute (0.132784)
	ova (0.129132)
	tra (0.123092)
	jca (0.11396)