Non-Coding RNA Search

Ss1.1-rret28_o11.5

Sequence:


               
               TTAGTGCATGAATAAGCATTTCCTCACACAATGAACATTTGAACTGTATTTATGAAAATT
TTCCAGTTTGCACCATGAATTTGTTAAATGGACGTTTAAAGAAATATATTCACTACTTTG
CATTCTTGCAAATCTGTCTCTCTGGCTTTATCCAATTTTGAATGCATTGTAACTAAGGTT
TGGATTTTTTTCTCCTGATTAGTAGATATTCAGTATTCTAGATGGTAATTGCCCAATATT
TATTCTATTTAGTTAGCTAAATATTTACATTCTTGTAACTTTCTATGATGTGTTGTGGTT
CTTATCCTATGGACTGTGAACAATAAGCCCACTAACTGTTTGTTGATGGAGAGTTTTTTT
CCTTAGAATAATGGAGATGCAGCTATTAGACACCATAATCAAGAAGATATCAAGCTGATA
GATTTATGTGTGAAGGACATTCTGTGGAAGCTACACTACCAACTAAACGAATGAATCCTA
TTTATTTCCAAAGTTAATATGTTCCTCGAACCAATTATTAAAAATTCTCGTCTCAACTTA
CAAAGTCTGATTTGAATGTTACCCATAAATTAAAAATGACTTCTATGAACCACTCTGTAT
CCCAAAGTGTTCTCATTAAATATTCCCCAGAATGTATTAATGATCAAGAAAATGTCCATT
CACCTCTTTAACTCAGTTGAAACACCAGGGCCCAGCAGTGAGGGCAAGCTCAGCATCTCT
ATTTTCAGATATAAGTCATTATCAATGTACAAACCCATTGTGTGATCTGTGATGCTGGAA
ACATTTTAGCACAAAGCAGATGTATGTCTTAGATGATATCTGTAAACAGTTTCTGGATCC
TGTTGGATAAATCTGTATTGTGATATCTATTTGAACTTAATAAAGTTATTGCATACAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAGTGCATGAATAAGCATTTCCTCACACAATGAACATTTGAACTGTATTTATGAAAATT
TTCCAGTTTGCACCATGAATTTGTTAAATGGACGTTTAAAGAAATATATTCACTACTTTG
CATTCTTGCAAATCTGTCTCTCTGGCTTTATCCAATTTTGAATGCATTGTAACTAAGGTT
TGGATTTTTTTCTCCTGATTAGTAGATATTCAGTATTCTAGATGGTAATTGCCCAATATT
TATTCTATTTAGTTAGCTAAATATTTACATTCTTGTAACTTTCTATGATGTGTTGTGGTT
CTTATCCTATGGACTGTGAACAATAAGCCCACTAACTGTTTGTTGATGGAGAGTTTTTTT
CCTTAGAATAATGGAGATGCAGCTATTAGACACCATAATCAAGAAGATATCAAGCTGATA
GATTTATGTGTGAAGGACATTCTGTGGAAGCTACACTACCAACTAAACGAATGAATCCTA
TTTATTTCCAAAGTTAATATGTTCCTCGAACCAATTATTAAAAATTCTCGTCTCAACTTA
CAAAGTCTGATTTGAATGTTACCCATAAATTAAAAATGACTTCTATGAACCACTCTGTAT
CCCAAAGTGTTCTCATTAAATATTCCCCAGAATGTATTAATGATCAAGAAAATGTCCATT
CACCTCTTTAACTCAGTTGAAACACCAGGGCCCAGCAGTGAGGGCAAGCTCAGCATCTCT
ATTTTCAGATATAAGTCATTATCAATGTACAAACCCATTGTGTGATCTGTGATGCTGGAA
ACATTTTAGCACAAAGCAGATGTATGTCTTAGATGATATCTGTAAACAGTTTCTGGATCC
TGTTGGATAAATCTGTATTGTGATATCTATTTGAACTTAATAAAGTTATTGCATACAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-832, gnl|bosTau2|chr22 (28500297-28499488)
               

               
               1-832, gnl|Hg17|chr3 (63576719-63577549)
               

               
               1-832, gnl|Mm7|chr14 (11431055-11431843)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-832, gnl|bosTau2|chr22 (28500297-28499488)
               

               
               1-832, gnl|Hg17|chr3 (63576719-63577549)
               

               
               1-832, gnl|Mm7|chr14 (11431055-11431843)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               fcc (0.791139)
               

               
               fco (0.78604)
               

               
               cbe (0.478469)
               

               
               ret (0.3862)
               

               
               sag (0.182715)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.791139)
               

               
               fco (0.78604)
               

               
               cbe (0.478469)
               

               
               ret (0.3862)
               

               
               sag (0.182715)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)

	1-832, gnl\|bosTau2\|chr22 (28500297-28499488)
	1-832, gnl\|Hg17\|chr3 (63576719-63577549)
	1-832, gnl\|Mm7\|chr14 (11431055-11431843)

	fcc (0.791139)
	fco (0.78604)
	cbe (0.478469)
	ret (0.3862)
	sag (0.182715)
	eye (0.170503)
	fhi (0.169578)