Non-Coding RNA Search

Ss1.1-rret29_a20.5

Sequence:


               
               TGCACATACACATGTGGACTTTGTACAGTATTTTTATACTTGGACACAAACGATAAAGTA
AATGTACTTGCTTCATTTCAACATATCTGTTGGACCAACACTCACTTAACTAACTTTTAT
GAATTTGTTGACTCCATTGCTATTTCAAAGTCATTGTATAGAATGCTGTAAATCCTAAAC
TTAATATATAATAAGTCCTGAGAACTTTGAATTGGTAAAGGATTTAATCCTTTCTTGAGT
AATTCAGAGTAATAGCTTTAGTGTGGTCTGATAGTACTGTGTCTATTCAACCATCTGTTT
TGCATTGTTTCTTACACAGACACAGCATGTTTGTTTTCCTGTTTTGCACCTTTTATAGCC
TTTACCACTGTGTATGTTCACAAACACCAAAGGAGAGAAAAGGTGCAGGATGTTACTGTA
AAATGCAGCTGCTATTCACAGGGCCGAAAAGCAAAGCACAAATAATCGTTATGTTAAGAA
CTACTAAGTAGTTTATAGAAGTAGGGGAAGATAACATTGCTTTTTATTATTCATGTGTTT
AAAGCCTTTTTCAGAATAAGTGCCGATCACTGAAGTTGTAAATAATGGTGCCTTAACTTC
ATATGCTTCTCTGGCACTTCATTTCTGATTTCTTTCCTGACTTGATAGTAATTTCCACTC
ACTTTTTACTAAGACAAGAATTTATGTACACTTACTAATGTTTTTCCCAGAGAAAGATCA
TTTTCTGTACTTCGGATGTGACTTAGTTATTTAAACATCAGCCATTTGATTTGTTTTTGG
TACCCAGTAACTGAATGAGATTCATCAATGTAGCTGTACACTAAATTCCATCATTCCATT
ATAATCCTGCATTTATTCCCCAGAGTGTGAATTGAAATTTAGTAATTTCACTTCCATATG
TCCATATCCACTCCCTCATTAAACAAGGGAAGATGTTCACCCACATGACCATTCCTGTTC
CGTAGAAGAACTCCATGGGTAGGGCAGACTCTTGACAAGAGGCCCAGGACAAGAATTCTA
GGGTCTAGACTAAATTTTAATGTAGGCTTTTATGGCACAGTTTGTCTTGTAAGTTGTCTT
ACTTAAACATTTGTAAACATTGTACATTCATATGAATTACTTTCCTTAATATAATGGGCT
TTAGAATCATAAGGGACATGACGGTAATTATTCCACAATAAACATTATGATTCATTTGTA
TTAATTATTCATTCAGCTTCACACAATTTTGTGTTTAGTTTGGATAAATAGGTATATATG
AGATTAATTCTCATGGCTAGAATAGAAATTCAGACACTTTTAAATGGTAAGAGATTGTAG
CATTCTAGTTGCTGTGAGATAAATGACAGAATATGCAATGAAAAATACCAAGAAAGAAAG
CACAATCTCCGATTCAGTTGCACACAACAGAATTTGTATGAACTGTGCACATGTTTAATA
AAAATGGTGATATCTGCAGAGCAGAAATAGGAGCGTTGAGGGTGTATCAGAGGGCAGGTT
AAAAAAAAACTTGAAATTTTTGGTGCCTAACACTAATGGTCCATTTGTAGGAAATCCCAT
GAGTGTGCTATATGAATGCCTTTTCTAAATATTAAAATGTGCTATTTAATAAGTTAATTA
AAATGCAGATTAAAGCACCACCGTTTATTTGCTTTTTCCATATACAGTTAACATTTCCTC
AAAGTAAAGCTTTGCAAATGTAAAGAAATACTAGATATTTTTACCTAAGTTTTTAAAACC
TAATTCCATTCCAAGAGTTGTCACTTAGCCACTGCTAAAGAAAAAAAAAAAAAAAAGTCT
TGGTAAAAGGTCATTGTTAATTGGACTCAGTGTATACTGCCTATTTACAATCTGTTACAG
CAATGTCTTTTACACAAAGAGTTAGAAAATGTCATGTCACTTTTTCAATTATAAGAAATA
GAGATTCTTTTCTAAAAGTGTATATTATAATTAACACTATATAGTTAACCAGAATTCAAA
ACAAGTGGAAATGTTTCTTTTAATTTAACTCATTATGTGCCTTCTTTGGTCATTAAAAAA
CATATATAATTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCACATACACATGTGGACTTTGTACAGTATTTTTATACTTGGACACAAACGATAAAGTA
AATGTACTTGCTTCATTTCAACATATCTGTTGGACCAACACTCACTTAACTAACTTTTAT
GAATTTGTTGACTCCATTGCTATTTCAAAGTCATTGTATAGAATGCTGTAAATCCTAAAC
TTAATATATAATAAGTCCTGAGAACTTTGAATTGGTAAAGGATTTAATCCTTTCTTGAGT
AATTCAGAGTAATAGCTTTAGTGTGGTCTGATAGTACTGTGTCTATTCAACCATCTGTTT
TGCATTGTTTCTTACACAGACACAGCATGTTTGTTTTCCTGTTTTGCACCTTTTATAGCC
TTTACCACTGTGTATGTTCACAAACACCAAAGGAGAGAAAAGGTGCAGGATGTTACTGTA
AAATGCAGCTGCTATTCACAGGGCCGAAAAGCAAAGCACAAATAATCGTTATGTTAAGAA
CTACTAAGTAGTTTATAGAAGTAGGGGAAGATAACATTGCTTTTTATTATTCATGTGTTT
AAAGCCTTTTTCAGAATAAGTGCCGATCACTGAAGTTGTAAATAATGGTGCCTTAACTTC
ATATGCTTCTCTGGCACTTCATTTCTGATTTCTTTCCTGACTTGATAGTAATTTCCACTC
ACTTTTTACTAAGACAAGAATTTATGTACACTTACTAATGTTTTTCCCAGAGAAAGATCA
TTTTCTGTACTTCGGATGTGACTTAGTTATTTAAACATCAGCCATTTGATTTGTTTTTGG
TACCCAGTAACTGAATGAGATTCATCAATGTAGCTGTACACTAAATTCCATCATTCCATT
ATAATCCTGCATTTATTCCCCAGAGTGTGAATTGAAATTTAGTAATTTCACTTCCATATG
TCCATATCCACTCCCTCATTAAACAAGGGAAGATGTTCACCCACATGACCATTCCTGTTC
CGTAGAAGAACTCCATGGGTAGGGCAGACTCTTGACAAGAGGCCCAGGACAAGAATTCTA
GGGTCTAGACTAAATTTTAATGTAGGCTTTTATGGCACAGTTTGTCTTGTAAGTTGTCTT
ACTTAAACATTTGTAAACATTGTACATTCATATGAATTACTTTCCTTAATATAATGGGCT
TTAGAATCATAAGGGACATGACGGTAATTATTCCACAATAAACATTATGATTCATTTGTA
TTAATTATTCATTCAGCTTCACACAATTTTGTGTTTAGTTTGGATAAATAGGTATATATG
AGATTAATTCTCATGGCTAGAATAGAAATTCAGACACTTTTAAATGGTAAGAGATTGTAG
CATTCTAGTTGCTGTGAGATAAATGACAGAATATGCAATGAAAAATACCAAGAAAGAAAG
CACAATCTCCGATTCAGTTGCACACAACAGAATTTGTATGAACTGTGCACATGTTTAATA
AAAATGGTGATATCTGCAGAGCAGAAATAGGAGCGTTGAGGGTGTATCAGAGGGCAGGTT
AAAAAAAAACTTGAAATTTTTGGTGCCTAACACTAATGGTCCATTTGTAGGAAATCCCAT
GAGTGTGCTATATGAATGCCTTTTCTAAATATTAAAATGTGCTATTTAATAAGTTAATTA
AAATGCAGATTAAAGCACCACCGTTTATTTGCTTTTTCCATATACAGTTAACATTTCCTC
AAAGTAAAGCTTTGCAAATGTAAAGAAATACTAGATATTTTTACCTAAGTTTTTAAAACC
TAATTCCATTCCAAGAGTTGTCACTTAGCCACTGCTAAAGAAAAAAAAAAAAAAAAGTCT
TGGTAAAAGGTCATTGTTAATTGGACTCAGTGTATACTGCCTATTTACAATCTGTTACAG
CAATGTCTTTTACACAAAGAGTTAGAAAATGTCATGTCACTTTTTCAATTATAAGAAATA
GAGATTCTTTTCTAAAAGTGTATATTATAATTAACACTATATAGTTAACCAGAATTCAAA
ACAAGTGGAAATGTTTCTTTTAATTTAACTCATTATGTGCCTTCTTTGGTCATTAAAAAA
CATATATAATTA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               530-646, + strand, RNAz p=0.952921
               

               
               1228-1330, - strand, RNAz p=0.82064

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               530-646, + strand, RNAz p=0.952921
               

               
               1228-1330, - strand, RNAz p=0.82064

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               31-2048, gnl|bosTau2|chr15 (23232459-23234475)
               

               
               31-2048, gnl|Hg17|chr11 (17067754-17065508)
               

               
               31-2048, gnl|Mm7|chr7 (112256199-112254267)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               31-2048, gnl|bosTau2|chr15 (23232459-23234475)
               

               
               31-2048, gnl|Hg17|chr11 (17067754-17065508)
               

               
               31-2048, gnl|Mm7|chr7 (112256199-112254267)

Expressed library(ies): 23 entry(ies)

More info

Expressed library(ies): 23 entry(ies)

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               lyg (0.532411)
               

               
               nje (0.49776)
               

               
               csk (0.422238)
               

               
               ret (0.3862)
               

               
               gul (0.355177)
               

               
               fco (0.314416)
               

               
               liv (0.292569)
               

               
               tra (0.246184)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               rec (0.17307)
               

               
               tbr (0.154178)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

Expressed library(ies): 23 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lyg (0.532411)
               

               
               nje (0.49776)
               

               
               csk (0.422238)
               

               
               ret (0.3862)
               

               
               gul (0.355177)
               

               
               fco (0.314416)
               

               
               liv (0.292569)
               

               
               tra (0.246184)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               rec (0.17307)
               

               
               tbr (0.154178)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

	530-646, + strand, RNAz p=0.952921
	1228-1330, - strand, RNAz p=0.82064

	31-2048, gnl\|bosTau2\|chr15 (23232459-23234475)
	31-2048, gnl\|Hg17\|chr11 (17067754-17065508)
	31-2048, gnl\|Mm7\|chr7 (112256199-112254267)

	lyg (0.532411)
	nje (0.49776)
	csk (0.422238)
	ret (0.3862)
	gul (0.355177)
	fco (0.314416)
	liv (0.292569)
	tra (0.246184)
	tes (0.207814)
	aor (0.195274)
	sag (0.182715)
	mgm (0.180343)
	rec (0.17307)
	tbr (0.154178)
	fat (0.147427)
	lin (0.145603)
	pty (0.142714)
	hlv (0.139256)
	kid (0.129735)
	ova (0.129132)
	sug (0.127291)
	ecc (0.115035)
	jca (0.11396)