Non-Coding RNA Search

Ss1.1-rret29_b3.5

Sequence:


               
               GGCAACACTCCTGTGGGTTGGTTGTTGCACTGTTAGGCATGTGGTTATGAGCTTTGGGAT
ATTTCTGCCTTGCAGCTTGTGGACTTTGGACAGCATTAAAAATATTTTTGTTGTTGTTAA
TATCAAGGGTGTCTACCCGAGCCACAGAATTTCTAACTGGTGTATTTCACTTGTTTTCTT
GTATGGTTTTGTTGCACAACACAGCTGCACTTCATTTTGCCATGGTTTGAATTTACCTGT
GTGCTCACACCAGAGACCTTAATCAGCCCATGTCAATCCTGATTTATTATTTTATCAGTT
ATTTTTGAAACACACATAATCACCGGCTAAGAAATCTGAAAATAAACACTATTGGCTAAC
ATGTGTTTACGGATGCTTATTTGAGACATATACCAAAGGTTCAAAAACCTATTGCTTTGG
ACTGTGAATATATTTCCTTCTCTTTGCTCTTATTTATTTAAGTGCCATACTGTACCTTTC
ATATCCACTGTGTATTTAGTTAAAGCATTGGCCAAGAGTAGTATTGGGATAATGTGCTTT
TATGAAGCTTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCAACACTCCTGTGGGTTGGTTGTTGCACTGTTAGGCATGTGGTTATGAGCTTTGGGAT
ATTTCTGCCTTGCAGCTTGTGGACTTTGGACAGCATTAAAAATATTTTTGTTGTTGTTAA
TATCAAGGGTGTCTACCCGAGCCACAGAATTTCTAACTGGTGTATTTCACTTGTTTTCTT
GTATGGTTTTGTTGCACAACACAGCTGCACTTCATTTTGCCATGGTTTGAATTTACCTGT
GTGCTCACACCAGAGACCTTAATCAGCCCATGTCAATCCTGATTTATTATTTTATCAGTT
ATTTTTGAAACACACATAATCACCGGCTAAGAAATCTGAAAATAAACACTATTGGCTAAC
ATGTGTTTACGGATGCTTATTTGAGACATATACCAAAGGTTCAAAAACCTATTGCTTTGG
ACTGTGAATATATTTCCTTCTCTTTGCTCTTATTTATTTAAGTGCCATACTGTACCTTTC
ATATCCACTGTGTATTTAGTTAAAGCATTGGCCAAGAGTAGTATTGGGATAATGTGCTTT
TATGAAGCTTTC

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-548, gnl|bosTau2|chr10 (19121162-19120610)
               

               
               4-548, gnl|Hg17|chr15 (32831201-32830634)
               

               
               4-548, gnl|Mm7|chr2 (113751133-113750557)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-548, gnl|bosTau2|chr10 (19121162-19120610)
               

               
               4-548, gnl|Hg17|chr15 (32831201-32830634)
               

               
               4-548, gnl|Mm7|chr2 (113751133-113750557)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ret (0.128733)
               

               
               ese (0.126502)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.128733)
               

               
               ese (0.126502)

	4-548, gnl\|bosTau2\|chr10 (19121162-19120610)
	4-548, gnl\|Hg17\|chr15 (32831201-32830634)
	4-548, gnl\|Mm7\|chr2 (113751133-113750557)