Non-Coding RNA Search

Ss1.1-rret29_c20.5

Sequence:


               
               CAGATTCCCAGTTTCCTGTTAGTTGGGGAGAATTCCTGCTTCAGATCTTTAGGTCTTTCC
GGGGCAGCCTCTGCAGAGAGAACTTCTGGCTGGCACTGCCAATTCCCCAGTCTATTGGGG
ATTTACGGTGTGAGTCTGAGACATTCTCAGCTTTCTCACTGTTGGCTTGGAGTGATTTCT
CTGGTCTAGTAAGTCTTAAAAATTGCCTGTCTGCAATATTTTATTTCTTTTTTTCTGTTT
TCTCTTCAATGCTTGTTTGCTGCTATTTAATCTCCATGTAATTTAAGTAGCATCTTGGGA
GGGAGTAAAATTAGATGTGTACATTTAGCTGGCCAGTAACTCTTACCTTTATAATATTTC
TGGCTAGATTGAATATAAATTGGGGAAAACTTCAGATAGAATTTTTCACATGCCATTTAT
CAAAATATGAGGAAAGATGTTGTTGAATTTGTCTCTGAAATTGGGAAGTGAGAAATGAAT
TGGAAAGAATCTTATCTTTTCCACTCAAACATTAATTTCCTATCTTTTTCCTTCTTTTCT
TTCTTTTAATTTTCTTTTTTGATGGTGAAGAGGATGATTGGATTTTTGGAGAGTTGGAAA
ATAAAAATAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGATTCCCAGTTTCCTGTTAGTTGGGGAGAATTCCTGCTTCAGATCTTTAGGTCTTTCC
GGGGCAGCCTCTGCAGAGAGAACTTCTGGCTGGCACTGCCAATTCCCCAGTCTATTGGGG
ATTTACGGTGTGAGTCTGAGACATTCTCAGCTTTCTCACTGTTGGCTTGGAGTGATTTCT
CTGGTCTAGTAAGTCTTAAAAATTGCCTGTCTGCAATATTTTATTTCTTTTTTTCTGTTT
TCTCTTCAATGCTTGTTTGCTGCTATTTAATCTCCATGTAATTTAAGTAGCATCTTGGGA
GGGAGTAAAATTAGATGTGTACATTTAGCTGGCCAGTAACTCTTACCTTTATAATATTTC
TGGCTAGATTGAATATAAATTGGGGAAAACTTCAGATAGAATTTTTCACATGCCATTTAT
CAAAATATGAGGAAAGATGTTGTTGAATTTGTCTCTGAAATTGGGAAGTGAGAAATGAAT
TGGAAAGAATCTTATCTTTTCCACTCAAACATTAATTTCCTATCTTTTTCCTTCTTTTCT
TTCTTTTAATTTTCTTTTTTGATGGTGAAGAGGATGATTGGATTTTTGGAGAGTTGGAAA
ATAAAAATAAAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               64-181, + strand, RNAz p=0.606179

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               64-181, + strand, RNAz p=0.606179

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-612, gnl|bosTau2|chr2 (693711-694292)
               

               
               1-612, gnl|Hg17|chr2 (190398294-190397631)
               

               
               1-612, gnl|Mm7|chr1 (72914987-72915552)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-612, gnl|bosTau2|chr2 (693711-694292)
               

               
               1-612, gnl|Hg17|chr2 (190398294-190397631)
               

               
               1-612, gnl|Mm7|chr1 (72914987-72915552)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               sag (0.182715)
               

               
               ret (0.128733)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.182715)
               

               
               ret (0.128733)

	1-612, gnl\|bosTau2\|chr2 (693711-694292)
	1-612, gnl\|Hg17\|chr2 (190398294-190397631)
	1-612, gnl\|Mm7\|chr1 (72914987-72915552)