Non-Coding RNA Search

Ss1.1-rret29_e16.5

Sequence:


               
               GTGCTGTATCTGAGTAGAAAACGTGACTGTGTAGAATGCTTTGATTTTTAGATTCAAAAT
TGAGATCCACTTGGCATATATCACTGGAACAGCAGACAGAGGATAATACAAGAAGAGACA
CAGATCATGGTTCATTCCTTCTACCTTGTCTCTCGTAGGATCGTTCTCCTAATTTGGCCA
AATGTTTCTGGTACTAGCCATCTTTTTACCATTGATGAGATTGTTTCAAATGGCTAAAAG
TAAATTACAGGTAGAGTCAAGTAAGTGGAACCCAATACACAAAGATACATATTTTCTAAA
GAACCAAGTTAGGAGAATACTTATTCTCTCTAAAGTATTAATCACTCTGGGAGTCATTTG
TTGCTTTAAATATTCGCTTTCCCACTGCATTCAAAACACCCTACTTACCAAATTTAATTA
CACACAACTTTTCAAGAATTCATCTTTTATTTAAGGAGAGGTACCCCTCTACCTACAGTG
AAATAGAAGGTATTGGCTTTCTCTAACCCATGTTAATTACAGATTCCACTGGGAGTCCTG
CGTCACTAATTGTGGTGTTTGTGAAAATAAGAAAGTACTTCCTATCCACATGCAAATGTT
TTTAAGAAGTTTTTTCCATAAAACCTAAGTGTAATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGCTGTATCTGAGTAGAAAACGTGACTGTGTAGAATGCTTTGATTTTTAGATTCAAAAT
TGAGATCCACTTGGCATATATCACTGGAACAGCAGACAGAGGATAATACAAGAAGAGACA
CAGATCATGGTTCATTCCTTCTACCTTGTCTCTCGTAGGATCGTTCTCCTAATTTGGCCA
AATGTTTCTGGTACTAGCCATCTTTTTACCATTGATGAGATTGTTTCAAATGGCTAAAAG
TAAATTACAGGTAGAGTCAAGTAAGTGGAACCCAATACACAAAGATACATATTTTCTAAA
GAACCAAGTTAGGAGAATACTTATTCTCTCTAAAGTATTAATCACTCTGGGAGTCATTTG
TTGCTTTAAATATTCGCTTTCCCACTGCATTCAAAACACCCTACTTACCAAATTTAATTA
CACACAACTTTTCAAGAATTCATCTTTTATTTAAGGAGAGGTACCCCTCTACCTACAGTG
AAATAGAAGGTATTGGCTTTCTCTAACCCATGTTAATTACAGATTCCACTGGGAGTCCTG
CGTCACTAATTGTGGTGTTTGTGAAAATAAGAAAGTACTTCCTATCCACATGCAAATGTT
TTTAAGAAGTTTTTTCCATAAAACCTAAGTGTAATT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               410-521, - strand, RNAz p=0.530646

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               410-521, - strand, RNAz p=0.530646

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

Help | Less info


               
               4-636, gnl|bosTau2|chr4 (22095372-22096010)
               

               
               4-636, gnl|canFam2|chr18 (18416516-18415893)
               

               
               4-636, gnl|dasNov1|scaffold_4265 (64911-65519)
               

               
               4-636, gnl|echTel1|scaffold_275864 (10349-9715)
               

               
               4-636, gnl|hg17|chr7 (104141883-104142502)
               

               
               4-636, gnl|Hg17|chr7 (104142031-104142673)
               

               
               4-636, gnl|loxAfr1|scaffold_46543 (37439-38067)
               

               
               4-636, gnl|mm7|chr5 (22315077-22315670)
               

               
               4-636, gnl|Mm7|chr5 (22315229-22315835)
               

               
               4-636, gnl|monDom2|scaffold_30 (31152011-31152697)
               

               
               4-636, gnl|oryCun1|scaffold_194408 (112429-111826)
               

               
               4-636, gnl|panTro1|chr6 (105977717-105978336)
               

               
               4-636, gnl|rheMac2|chr3 (142303951-142304591)
               

               
               4-636, gnl|rn3|chr4 (7235323-7234733)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-636, gnl|bosTau2|chr4 (22095372-22096010)
               

               
               4-636, gnl|canFam2|chr18 (18416516-18415893)
               

               
               4-636, gnl|dasNov1|scaffold_4265 (64911-65519)
               

               
               4-636, gnl|echTel1|scaffold_275864 (10349-9715)
               

               
               4-636, gnl|hg17|chr7 (104141883-104142502)
               

               
               4-636, gnl|Hg17|chr7 (104142031-104142673)
               

               
               4-636, gnl|loxAfr1|scaffold_46543 (37439-38067)
               

               
               4-636, gnl|mm7|chr5 (22315077-22315670)
               

               
               4-636, gnl|Mm7|chr5 (22315229-22315835)
               

               
               4-636, gnl|monDom2|scaffold_30 (31152011-31152697)
               

               
               4-636, gnl|oryCun1|scaffold_194408 (112429-111826)
               

               
               4-636, gnl|panTro1|chr6 (105977717-105978336)
               

               
               4-636, gnl|rheMac2|chr3 (142303951-142304591)
               

               
               4-636, gnl|rn3|chr4 (7235323-7234733)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ret (0.257467)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.257467)

	4-636, gnl\|bosTau2\|chr4 (22095372-22096010)
	4-636, gnl\|canFam2\|chr18 (18416516-18415893)
	4-636, gnl\|dasNov1\|scaffold_4265 (64911-65519)
	4-636, gnl\|echTel1\|scaffold_275864 (10349-9715)
	4-636, gnl\|hg17\|chr7 (104141883-104142502)
	4-636, gnl\|Hg17\|chr7 (104142031-104142673)
	4-636, gnl\|loxAfr1\|scaffold_46543 (37439-38067)
	4-636, gnl\|mm7\|chr5 (22315077-22315670)
	4-636, gnl\|Mm7\|chr5 (22315229-22315835)
	4-636, gnl\|monDom2\|scaffold_30 (31152011-31152697)
	4-636, gnl\|oryCun1\|scaffold_194408 (112429-111826)
	4-636, gnl\|panTro1\|chr6 (105977717-105978336)
	4-636, gnl\|rheMac2\|chr3 (142303951-142304591)
	4-636, gnl\|rn3\|chr4 (7235323-7234733)