Non-Coding RNA Search

Ss1.1-rret29_f22.5

Sequence:


               
               CATTATTTGATTTTAGTAGGAAGCATTTGGATTTAGCTTACAGAACACAGATGTTCTGTG
GGAACATGGCCTGAAGTCCTATATAATGTAATGTTTTCTCATTAAATAAACTTCTGAACA
TCAAACTTAACTACCAAGTGAGGTCAAGTGCCTGAAAAGTGCTGTATACATCTCATTAGC
ACGTTTTCCTTACGTGAAAGATGCATCTTAAAGCAATGCCATATCAGGCTTTCATCTGCT
AAAAACATACTTGTTGCCAAACTTTATCATCCACCACTATTCCTCTCTCCTTAGAACAGG
TTGAAACCTATTTTACAATTGAAAGAGAGGTTCCTTTATCTATATAAAGTCCCTAAAACT
ATGTCTTGGTATTGGTAGACTTAAGCTTATCTTAGTATAAGATTGCACTTTTTAAAAACT
CTGGACATAAACATTATTAGGTGATGACTATAGCTTGTCCTAAGTCATAGTTGTGATCTT
TCTTGAGAGGAATTCTTTACTGTGGTTAATACCTACTGTAATTAAGCACTCTTTGCTTTT
TACAAAGTATAATGCAAATTATTAGTTCTATACTATTTTTGTCCTCTCCAGAAAGTAAAT
GGTTGAAATGGCATTGTCTAATCCAGTGGCACTTTATTAGTAATACATTTTATTTGTCGT
AGGTGTAAGAGAATTCATGCTTTTACTTACAGAGACTCATACATTTTTAGCTAACGCTTT
TAAGTTGTAAGATACGTAGTGTCAGTATTACTATAATTGCGCATTTTATATTTCAAAAAT
GGGTAAAATTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATTATTTGATTTTAGTAGGAAGCATTTGGATTTAGCTTACAGAACACAGATGTTCTGTG
GGAACATGGCCTGAAGTCCTATATAATGTAATGTTTTCTCATTAAATAAACTTCTGAACA
TCAAACTTAACTACCAAGTGAGGTCAAGTGCCTGAAAAGTGCTGTATACATCTCATTAGC
ACGTTTTCCTTACGTGAAAGATGCATCTTAAAGCAATGCCATATCAGGCTTTCATCTGCT
AAAAACATACTTGTTGCCAAACTTTATCATCCACCACTATTCCTCTCTCCTTAGAACAGG
TTGAAACCTATTTTACAATTGAAAGAGAGGTTCCTTTATCTATATAAAGTCCCTAAAACT
ATGTCTTGGTATTGGTAGACTTAAGCTTATCTTAGTATAAGATTGCACTTTTTAAAAACT
CTGGACATAAACATTATTAGGTGATGACTATAGCTTGTCCTAAGTCATAGTTGTGATCTT
TCTTGAGAGGAATTCTTTACTGTGGTTAATACCTACTGTAATTAAGCACTCTTTGCTTTT
TACAAAGTATAATGCAAATTATTAGTTCTATACTATTTTTGTCCTCTCCAGAAAGTAAAT
GGTTGAAATGGCATTGTCTAATCCAGTGGCACTTTATTAGTAATACATTTTATTTGTCGT
AGGTGTAAGAGAATTCATGCTTTTACTTACAGAGACTCATACATTTTTAGCTAACGCTTT
TAAGTTGTAAGATACGTAGTGTCAGTATTACTATAATTGCGCATTTTATATTTCAAAAAT
GGGTAAAATTCA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               2-792, gnl|bosTau2|chr1 (62167127-62167910)
               

               
               2-792, gnl|Hg17|chr3 (172089873-172089044)
               

               
               2-792, gnl|Mm7|chr3 (28613650-28614430)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-792, gnl|bosTau2|chr1 (62167127-62167910)
               

               
               2-792, gnl|Hg17|chr3 (172089873-172089044)
               

               
               2-792, gnl|Mm7|chr3 (28613650-28614430)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

Help | Less info


               
               ret (0.3862)
               

               
               cty (0.20816)
               

               
               aor (0.195274)
               

               
               fco (0.157208)
               

               
               nmm (0.132802)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.3862)
               

               
               cty (0.20816)
               

               
               aor (0.195274)
               

               
               fco (0.157208)
               

               
               nmm (0.132802)

	2-792, gnl\|bosTau2\|chr1 (62167127-62167910)
	2-792, gnl\|Hg17\|chr3 (172089873-172089044)
	2-792, gnl\|Mm7\|chr3 (28613650-28614430)

	ret (0.3862)
	cty (0.20816)
	aor (0.195274)
	fco (0.157208)
	nmm (0.132802)