Non-Coding RNA Search

Ss1.1-rret29_g21.5

Sequence:


               
               CTCTGGAGAACGCTGCCAAACAAACGTGGCGACTTGCAAGAGAGATCCTGACCAACCCGA
AGAGTTTGGAAAAACTTTAGAGGACAATTTAATCGACAGCCGAAATGTGATTCCTAGTCT
CCAAGTTCTCAAGAAGTGTAGACTTCCTGTTCGATTCCTATCTAATATTCCACTTGACAG
TGCAAACAATCTCTTCCTTGAAAAGGAATACTAATACAGTGTTTAGGCATCATCTCACCC
ACCCCTCCAAAGGAAGGAAAAGAAGTAGGGAAAGCCAAGCGGATGGAGAAAAGCCCAAAC
CCGCAAGTATTAGAAGACTTCTTTACAAAGGATTTCATATCGCCCTTGAAAAGTACACAG
TAACACCCGGAAAACAGCCTGGCTCTAACGCAAGACCGCAATGAACACTGCCTAACTATC
AAAGGATTATAGCAATCCTGGTGATTTAGGCGCATCTGGCTGTGAGTAAACACGATTTGG
ATATGCCATCTGAAGGGAAGTGTAATGTATATTTTGATTTGTAACAAATATTGTGATCTC
ACTTTGTCTTTGCAAGTGTGGATGTTGGTGTTTTGTGATTTGGTGAACAGAAGTTGAATT
GCCATTTTGGATACTTCCAGGCATTTTCCACTAACGAAGATATAATTTAAAGGTAGATTT
CCTCTTGGTACTTTTATCTGTCTTCAAAAGTGTCTGAACTTTAAAAAGTTTACATTATGT
TTCAAATATATTGCTTGTTCTATTTCTAACATTCCATAAATATACTTGAAATGTTATTTA
AATATATTCAAAGAAATTTGAATTCAGCTTATATAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTGGAGAACGCTGCCAAACAAACGTGGCGACTTGCAAGAGAGATCCTGACCAACCCGA
AGAGTTTGGAAAAACTTTAGAGGACAATTTAATCGACAGCCGAAATGTGATTCCTAGTCT
CCAAGTTCTCAAGAAGTGTAGACTTCCTGTTCGATTCCTATCTAATATTCCACTTGACAG
TGCAAACAATCTCTTCCTTGAAAAGGAATACTAATACAGTGTTTAGGCATCATCTCACCC
ACCCCTCCAAAGGAAGGAAAAGAAGTAGGGAAAGCCAAGCGGATGGAGAAAAGCCCAAAC
CCGCAAGTATTAGAAGACTTCTTTACAAAGGATTTCATATCGCCCTTGAAAAGTACACAG
TAACACCCGGAAAACAGCCTGGCTCTAACGCAAGACCGCAATGAACACTGCCTAACTATC
AAAGGATTATAGCAATCCTGGTGATTTAGGCGCATCTGGCTGTGAGTAAACACGATTTGG
ATATGCCATCTGAAGGGAAGTGTAATGTATATTTTGATTTGTAACAAATATTGTGATCTC
ACTTTGTCTTTGCAAGTGTGGATGTTGGTGTTTTGTGATTTGGTGAACAGAAGTTGAATT
GCCATTTTGGATACTTCCAGGCATTTTCCACTAACGAAGATATAATTTAAAGGTAGATTT
CCTCTTGGTACTTTTATCTGTCTTCAAAAGTGTCTGAACTTTAAAAAGTTTACATTATGT
TTCAAATATATTGCTTGTTCTATTTCTAACATTCCATAAATATACTTGAAATGTTATTTA
AATATATTCAAAGAAATTTGAATTCAGCTTATATAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               190-306, - strand, RNAz p=0.59827
               

               
               543-701, + strand, RNAz p=0.699998

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               190-306, - strand, RNAz p=0.59827
               

               
               543-701, + strand, RNAz p=0.699998

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_005584, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_005584, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-816, gnl|bosTau2|chr12 (13205087-13205882)
               

               
               1-816, gnl|Hg17|chr13 (34947275-34946474)
               

               
               1-816, gnl|Mm7|chr3 (55911049-55911791)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-816, gnl|bosTau2|chr12 (13205087-13205882)
               

               
               1-816, gnl|Hg17|chr13 (34947275-34946474)
               

               
               1-816, gnl|Mm7|chr3 (55911049-55911791)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               ret (0.901133)
               

               
               sug (0.254582)
               

               
               cbe (0.239234)
               

               
               pla (0.133672)
               

               
               thg (0.126791)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.901133)
               

               
               sug (0.254582)
               

               
               cbe (0.239234)
               

               
               pla (0.133672)
               

               
               thg (0.126791)

	190-306, - strand, RNAz p=0.59827
	543-701, + strand, RNAz p=0.699998

	1-816, gnl\|bosTau2\|chr12 (13205087-13205882)
	1-816, gnl\|Hg17\|chr13 (34947275-34946474)
	1-816, gnl\|Mm7\|chr3 (55911049-55911791)

	ret (0.901133)
	sug (0.254582)
	cbe (0.239234)
	pla (0.133672)
	thg (0.126791)