Non-Coding RNA Search

Ss1.1-rret30_c19.5

Sequence:


               
               AAAGAAATGGAAAATGTTTACTATTACAGGGACCTCAACACTGCCCTTCCATATAGGCTG
GATAAAAACTGTTTTTAAGTCAGTGATTTTAGACTGACCTCCATTTAAATTATGTTTGTA
TATGAACTTTACTCTGACCTGTGATCATGTTTCAGGAAGGAATGAAAGAGAGTCTTTTCT
TAATAAAGAAAACACACTCAAGGACTTTGTTCACTTTCCAAAGCTACTTGTTTACATTGT
ACACTGCGACCACCTTGCCGCTTTTCATCACAAGCTTGAATATTTAAATTCTGTACTTAT
ATCTGTAAAATAGCCAGGAATTTCCTGTTTGTGATTATTATGCCTTTTTACACACACAAA
CAATGGCTGTAAATTATTGTAAATGGATTAAATGAGCTTTCCTTATTTCCTTCCCCTTCT
CAGGCTTTTTTTGACTGTTCCTTTCCCTACCAACTCAGGCCTTCTTATCATTTAAAAAAT
ATATATCAGTGTAATAACACTTTTTAATGATTTGTCTTGATGGAATCATTATTTAGAATG
TAAAAAATGGGGAAAGGGGCCACTTAATTCCATTAGTCCTTTTTATATTGACTTTTATTA
GATACATGTTATTTCCTTTTTCTCCCTTTTTTAAGTCAAAATATTGTGTATGTAGTGACA
AAATGGTGAGATATGTAAAAATCTAAACTGCATGCTCTGGAAACCTTTTCAGATGCATTT
GGTTTAAAAGGGTAGGTGTATGAACACTTTCAGAATCCAAACGGCCAAAAGTTATTGTAA
ATCCATTTGTTTTCCTTTTCATGTGGGCAATAATGTCAAATGTGCTATGCAGCCAGGTAA
CATTTTAGATAAACTTGATTGACTTTTAATAAAAACTGTTACAGTGCACACTGATTGTAT
ATAAAAACCTTATATATGACAAATTAAATTTAAGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAGAAATGGAAAATGTTTACTATTACAGGGACCTCAACACTGCCCTTCCATATAGGCTG
GATAAAAACTGTTTTTAAGTCAGTGATTTTAGACTGACCTCCATTTAAATTATGTTTGTA
TATGAACTTTACTCTGACCTGTGATCATGTTTCAGGAAGGAATGAAAGAGAGTCTTTTCT
TAATAAAGAAAACACACTCAAGGACTTTGTTCACTTTCCAAAGCTACTTGTTTACATTGT
ACACTGCGACCACCTTGCCGCTTTTCATCACAAGCTTGAATATTTAAATTCTGTACTTAT
ATCTGTAAAATAGCCAGGAATTTCCTGTTTGTGATTATTATGCCTTTTTACACACACAAA
CAATGGCTGTAAATTATTGTAAATGGATTAAATGAGCTTTCCTTATTTCCTTCCCCTTCT
CAGGCTTTTTTTGACTGTTCCTTTCCCTACCAACTCAGGCCTTCTTATCATTTAAAAAAT
ATATATCAGTGTAATAACACTTTTTAATGATTTGTCTTGATGGAATCATTATTTAGAATG
TAAAAAATGGGGAAAGGGGCCACTTAATTCCATTAGTCCTTTTTATATTGACTTTTATTA
GATACATGTTATTTCCTTTTTCTCCCTTTTTTAAGTCAAAATATTGTGTATGTAGTGACA
AAATGGTGAGATATGTAAAAATCTAAACTGCATGCTCTGGAAACCTTTTCAGATGCATTT
GGTTTAAAAGGGTAGGTGTATGAACACTTTCAGAATCCAAACGGCCAAAAGTTATTGTAA
ATCCATTTGTTTTCCTTTTCATGTGGGCAATAATGTCAAATGTGCTATGCAGCCAGGTAA
CATTTTAGATAAACTTGATTGACTTTTAATAAAAACTGTTACAGTGCACACTGATTGTAT
ATAAAAACCTTATATATGACAAATTAAATTTAAGAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               467-928, gnl|bosTau2|chr15 (5932458-5932922)
               

               
               467-928, gnl|Hg17|chr5 (98219270-98218822)
               

               
               467-928, gnl|Mm7|chr17 (14007813-14008255)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               467-928, gnl|bosTau2|chr15 (5932458-5932922)
               

               
               467-928, gnl|Hg17|chr5 (98219270-98218822)
               

               
               467-928, gnl|Mm7|chr17 (14007813-14008255)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

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               mgp (0.230681)
               

               
               rec (0.17307)
               

               
               spl (0.143184)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               med (0.116252)
               

               
               ldo (0.0970026)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.230681)
               

               
               rec (0.17307)
               

               
               spl (0.143184)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               med (0.116252)
               

               
               ldo (0.0970026)

	467-928, gnl\|bosTau2\|chr15 (5932458-5932922)
	467-928, gnl\|Hg17\|chr5 (98219270-98218822)
	467-928, gnl\|Mm7\|chr17 (14007813-14008255)

	mgp (0.230681)
	rec (0.17307)
	spl (0.143184)
	kid (0.129735)
	ret (0.128733)
	med (0.116252)
	ldo (0.0970026)