Ss1.1-rret30_e9.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAAAACCTACGTTCAGTTTTTACAAGTCAGCTAAAGGTGAAGCTTGACTGTGTTCCTTGG CACAGGAACTCACTTGAACTATCACTTTGACTATCAGATATGTTTTTGCACTATTTTTTT AAACTAAAAGAAATATCTATGCTGTAGGTGGTATATTAGAATTTTCTGGAAGCAGAAAAC ACCTAGATTTTGTCGTTAGCTCTCAGTCACAGTAGAAACATGCACATGGAAACCCATGAG CAAGTATTCTACCAAGGAGAACATCAAGCAGGATTAGCAAGGCAGGCAGACCCTCCCCCC AGGGAGAGGGTCTTCTGAGCGGGCAGCATGGGGACACACAAGCAAAAGTTGCACTTAGAC ATCTGTGTTCATTAGCACAAGTCAATTAATTGTGCTTCTTCATTTTTAACTTTCAAAAGA GGATGTATGTTATTCTACATGCTGTAACCATCAGGCCATTGTTGGTAATCTAAATTCCAT TTTTGATATTGCAATTAATTCTAACAGCTTGAGCACATTATTCTTATTACCAGGGCAAAA CTTTGCTTCAGGAGGGGGGCTTCACTGACTAGTGGGGGCTCTTGTGAGCATGTGGTGAAT CAGCTCATGGTTCTTGTGTTACCAAGTGTTTCCCCTTTGTCCTAGTATTTCAAGGGGGTT TAAAATGGGATAAATCTTAGTCAAAAGAACCAAAACCATCCTGAAATGCCTTGCTAATAC AACTAATCCTTCCACATACCTGCAGTACTTATTTCTTTCCTCCATGTACACTTTATGTTA ACACGGTTATTATAAAGCACATCTTCTAAATCTACAATCATTCTTTTGACAATTACTGGT ACCCAAAGAAAATTCATTTTCTTTGAGTTACCCCAGTAATATATAAAAGCTGTGTCTTGT TAGAGTGGTACATTATGAATCGCATATATCTCAGAATTCACAGCAACTTGTTAAGATGGA AAACAATGCTCAACCTCCACAGCTCATTCTTCCCGATATAATCAGAGTGAAAAATAATTT GAGAATCTGAAGGCTGATATTTTTGGTTTTTTTTTTTTTTTCCCTCAGCTCATCCCTGCA GTTATTTGAGTAAATAAAAAAACCACTTTTCTGCTATCCATTGTTATGCATTCCATGCTT AAGATAAAAGTGGTTCTTATGAGACTGAATCAATTACAGTTTAGGGGCTAAAAAGCCAAA TAGGTCGAAGACAATCTTCCAAACAGATCAATGGAATACAATTTCATTGGAAATGTGAAA CACTTTCCCAACAATGTTCATGACTTTCTTCTGTTTTTGAGAAGAGTTTGATATGCTGGG CCACTTTTTAGCTTTTGTTGTTTTTTCCATTGTCTGAAAAATTAGGCAGCAAGTGGAGAA GTCATTATGTGAAGACCACATGGAGTTCTGTAAGGAAAGAGATGTTTACTTTGTCTTTGA TTAAACTTCGTTTCCCGGTCTACGGTTACAATTGATTTTTGGAGTATTCGAGCTGTTTTT TTCTACGTGTTTTGGGTAAAGAAGACAGTATGACAAAAATGCTTGTCAAAATTTCACTCA AGAGTAATTTCATGAGAAATGGATGGCTTAACGCATTATCCCAACTAAATTCCTATTTGC AGCAGGCTTGTACGACAGCAGGAAGGGGGGAAGCGGGGGTAGTGTCTAAGATAGGGTGTG AGGTATATTTCTTTGCCTGTGTATTTTAACATCTTATATCTAAGATCATGAAAACCTAGC TTTATTGGAGGAAAGTATTCCTCTTAAATTTTGGCCTCTGTCAGCAGAATGATAAGTGCA ATAGTTGTAAATCTACTTGACACTATAATAAACTGAACTGAACTTTTCAATGTCCTTTTC TCATACGTGTTAGACTGAGGTTTTTTGAGAAGGGAGATAGTATCTTATCTTTTTATCTCC AGCCTTTTGCACCATATAGGCTCAGTAAAGGTTGTTTGGTTGGTTGATTCATTGGCTGGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAAAACCTACGTTCAGTTTTTACAAGTCAGCTAAAGGTGAAGCTTGACTGTGTTCCTTGG CACAGGAACTCACTTGAACTATCACTTTGACTATCAGATATGTTTTTGCACTATTTTTTT AAACTAAAAGAAATATCTATGCTGTAGGTGGTATATTAGAATTTTCTGGAAGCAGAAAAC ACCTAGATTTTGTCGTTAGCTCTCAGTCACAGTAGAAACATGCACATGGAAACCCATGAG CAAGTATTCTACCAAGGAGAACATCAAGCAGGATTAGCAAGGCAGGCAGACCCTCCCCCC AGGGAGAGGGTCTTCTGAGCGGGCAGCATGGGGACACACAAGCAAAAGTTGCACTTAGAC ATCTGTGTTCATTAGCACAAGTCAATTAATTGTGCTTCTTCATTTTTAACTTTCAAAAGA GGATGTATGTTATTCTACATGCTGTAACCATCAGGCCATTGTTGGTAATCTAAATTCCAT TTTTGATATTGCAATTAATTCTAACAGCTTGAGCACATTATTCTTATTACCAGGGCAAAA CTTTGCTTCAGGAGGGGGGCTTCACTGACTAGTGGGGGCTCTTGTGAGCATGTGGTGAAT CAGCTCATGGTTCTTGTGTTACCAAGTGTTTCCCCTTTGTCCTAGTATTTCAAGGGGGTT TAAAATGGGATAAATCTTAGTCAAAAGAACCAAAACCATCCTGAAATGCCTTGCTAATAC AACTAATCCTTCCACATACCTGCAGTACTTATTTCTTTCCTCCATGTACACTTTATGTTA ACACGGTTATTATAAAGCACATCTTCTAAATCTACAATCATTCTTTTGACAATTACTGGT ACCCAAAGAAAATTCATTTTCTTTGAGTTACCCCAGTAATATATAAAAGCTGTGTCTTGT TAGAGTGGTACATTATGAATCGCATATATCTCAGAATTCACAGCAACTTGTTAAGATGGA AAACAATGCTCAACCTCCACAGCTCATTCTTCCCGATATAATCAGAGTGAAAAATAATTT GAGAATCTGAAGGCTGATATTTTTGGTTTTTTTTTTTTTTTCCCTCAGCTCATCCCTGCA GTTATTTGAGTAAATAAAAAAACCACTTTTCTGCTATCCATTGTTATGCATTCCATGCTT AAGATAAAAGTGGTTCTTATGAGACTGAATCAATTACAGTTTAGGGGCTAAAAAGCCAAA TAGGTCGAAGACAATCTTCCAAACAGATCAATGGAATACAATTTCATTGGAAATGTGAAA CACTTTCCCAACAATGTTCATGACTTTCTTCTGTTTTTGAGAAGAGTTTGATATGCTGGG CCACTTTTTAGCTTTTGTTGTTTTTTCCATTGTCTGAAAAATTAGGCAGCAAGTGGAGAA GTCATTATGTGAAGACCACATGGAGTTCTGTAAGGAAAGAGATGTTTACTTTGTCTTTGA TTAAACTTCGTTTCCCGGTCTACGGTTACAATTGATTTTTGGAGTATTCGAGCTGTTTTT TTCTACGTGTTTTGGGTAAAGAAGACAGTATGACAAAAATGCTTGTCAAAATTTCACTCA AGAGTAATTTCATGAGAAATGGATGGCTTAACGCATTATCCCAACTAAATTCCTATTTGC AGCAGGCTTGTACGACAGCAGGAAGGGGGGAAGCGGGGGTAGTGTCTAAGATAGGGTGTG AGGTATATTTCTTTGCCTGTGTATTTTAACATCTTATATCTAAGATCATGAAAACCTAGC TTTATTGGAGGAAAGTATTCCTCTTAAATTTTGGCCTCTGTCAGCAGAATGATAAGTGCA ATAGTTGTAAATCTACTTGACACTATAATAAACTGAACTGAACTTTTCAATGTCCTTTTC TCATACGTGTTAGACTGAGGTTTTTTGAGAAGGGAGATAGTATCTTATCTTTTTATCTCC AGCCTTTTGCACCATATAGGCTCAGTAAAGGTTGTTTGGTTGGTTGATTCATTGGCTGGC |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 157-276, - strand, RNAz p=0.973852 | |
| 766-924, - strand, RNAz p=0.98342 | |
| 1239-1353, - strand, RNAz p=0.996445 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 157-276, - strand, RNAz p=0.973852 | |
| 766-924, - strand, RNAz p=0.98342 | |
| 1239-1353, - strand, RNAz p=0.996445 |
| Predicted microRNA(s): 1 entry(ies) | More info |
| Predicted microRNA(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
| 855-982, - strand, RNAmicro p=0.980637 |
| Similar Transcript(s): 12 entry(ies) | More info |
| Similar Transcript(s): 12 entry(ies) | Help | Less info |
| 770-921, CR852900 Normalized and Subtracted bovine endometrium tissues (emb|CR852900.2|), blast E-value=0, identity=92.81% | |
| 770-921, 4058188 BARC 8BOV Bos taurus cDNA clone 8BOV_4E18 5', mRNA sequence (gb|CK834089.1|), blast E-value=0, identity=92.81% | |
| 770-921, 4122215 BARC 8BOV Bos taurus cDNA clone 8BOV_31D20 5', mRNA (gb|CN787964.1|), blast E-value=0, identity=92.81% | |
| 770-921, 4128537 BARC 8BOV Bos taurus cDNA clone 8BOV_48B15 5', mRNA (gb|CN793502.1|), blast E-value=0, identity=92.81% | |
| 770-921, UMC-bend_0B01-031-f04 Day 16 Uterus from a non-pregnant animal bend (gb|DN640820.1|), blast E-value=0, identity=92.81% | |
| 770-921, Hw_Fat_47_050805_F12 Bos taurus CF-24-HW fat cDNA library Bos (gb|DV778030.1|), blast E-value=0, identity=92.81% | |
| 1240-1353, AM014948 KN-252-liver, Bos taurus Bos taurus cDNA clone C0007418o12 (emb|AM014948.1|), blast E-value=3.00018e-42, identity=94.74% | |
| 1240-1353, AM016011 KN-252-liver, Bos taurus Bos taurus cDNA clone C0007418o12 (emb|AM016011.1|), blast E-value=3.00018e-42, identity=94.74% | |
| 1240-1353, UMC-bcl_0A01-027-c07 Day 8 Corpus luteum bcl Bos taurus cDNA 3', (gb|CX948496.1|), blast E-value=3.00018e-42, identity=94.74% | |
| 1240-1353, UMC-bemiv_0A01-015-c03 Nuclear-transfer derived blastocysts D8 (gb|CX951094.1|), blast E-value=3.00018e-42, identity=94.74% | |
| 1240-1353, UMC-bof_0A02-005-f03 Ovarian follicle recruited bof Bos taurus cDNA (gb|CX954287.1|), blast E-value=3.00018e-42, identity=94.74% | |
| 1240-1353, Hw_Fat_47_050805_F12 Bos taurus CF-24-HW fat cDNA library Bos (gb|DV778030.1|), blast E-value=3.00018e-42, identity=94.74% |
| Similar Transcript(s): 12 entry(ies) | Help | Less info |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
| 770-921, CR852900 Normalized and Subtracted bovine endometrium tissues (emb|CR852900.2|), blast E-value=0, identity=92.81% | |
| 770-921, 4058188 BARC 8BOV Bos taurus cDNA clone 8BOV_4E18 5', mRNA sequence (gb|CK834089.1|), blast E-value=0, identity=92.81% | |
| 770-921, 4122215 BARC 8BOV Bos taurus cDNA clone 8BOV_31D20 5', mRNA (gb|CN787964.1|), blast E-value=0, identity=92.81% | |
| 770-921, 4128537 BARC 8BOV Bos taurus cDNA clone 8BOV_48B15 5', mRNA (gb|CN793502.1|), blast E-value=0, identity=92.81% | |
| 770-921, UMC-bend_0B01-031-f04 Day 16 Uterus from a non-pregnant animal bend (gb|DN640820.1|), blast E-value=0, identity=92.81% | |
| 770-921, Hw_Fat_47_050805_F12 Bos taurus CF-24-HW fat cDNA library Bos (gb|DV778030.1|), blast E-value=0, identity=92.81% | |
| 1240-1353, AM014948 KN-252-liver, Bos taurus Bos taurus cDNA clone C0007418o12 (emb|AM014948.1|), blast E-value=3.00018e-42, identity=94.74% | |
| 1240-1353, AM016011 KN-252-liver, Bos taurus Bos taurus cDNA clone C0007418o12 (emb|AM016011.1|), blast E-value=3.00018e-42, identity=94.74% | |
| 1240-1353, UMC-bcl_0A01-027-c07 Day 8 Corpus luteum bcl Bos taurus cDNA 3', (gb|CX948496.1|), blast E-value=3.00018e-42, identity=94.74% | |
| 1240-1353, UMC-bemiv_0A01-015-c03 Nuclear-transfer derived blastocysts D8 (gb|CX951094.1|), blast E-value=3.00018e-42, identity=94.74% | |
| 1240-1353, UMC-bof_0A02-005-f03 Ovarian follicle recruited bof Bos taurus cDNA (gb|CX954287.1|), blast E-value=3.00018e-42, identity=94.74% | |
| 1240-1353, Hw_Fat_47_050805_F12 Bos taurus CF-24-HW fat cDNA library Bos (gb|DV778030.1|), blast E-value=3.00018e-42, identity=94.74% |
| Aligned organism(s): 6 entry(ies) | More info |
| Aligned organism(s): 6 entry(ies) | Help | Less info |
| 1-1151, gnl|bosTau2|chr17 (4565107-4566256) | |
| 1-1151, gnl|Hg17|chr4 (152400881-152399725) | |
| 1-1151, gnl|Mm7|chr3 (86239529-86240650) | |
| 1200-1966, gnl|bosTau2|chr17 (4566345-4567115) | |
| 1200-1966, gnl|Hg17|chr4 (152399668-152398623) | |
| 1200-1966, gnl|Mm7|chr3 (86240718-86241430) |
| Aligned organism(s): 6 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-1151, gnl|bosTau2|chr17 (4565107-4566256) | |
| 1-1151, gnl|Hg17|chr4 (152400881-152399725) | |
| 1-1151, gnl|Mm7|chr3 (86239529-86240650) | |
| 1200-1966, gnl|bosTau2|chr17 (4566345-4567115) | |
| 1200-1966, gnl|Hg17|chr4 (152399668-152398623) | |
| 1200-1966, gnl|Mm7|chr3 (86240718-86241430) |
| Expressed library(ies): 20 entry(ies) | More info |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
| aor (0.390549) | |
| ski (0.29347) | |
| tra (0.246184) | |
| tes (0.207814) | |
| fli (0.202881) | |
| cmu (0.186393) | |
| sag (0.182715) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| fco (0.157208) | |
| lun (0.150489) | |
| liv (0.146284) | |
| lin (0.145603) | |
| ste (0.135208) | |
| kid (0.129735) | |
| ova (0.129132) | |
| ret (0.128733) | |
| sug (0.127291) | |
| bla (0.124347) |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| aor (0.390549) | |
| ski (0.29347) | |
| tra (0.246184) | |
| tes (0.207814) | |
| fli (0.202881) | |
| cmu (0.186393) | |
| sag (0.182715) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| fco (0.157208) | |
| lun (0.150489) | |
| liv (0.146284) | |
| lin (0.145603) | |
| ste (0.135208) | |
| kid (0.129735) | |
| ova (0.129132) | |
| ret (0.128733) | |
| sug (0.127291) | |
| bla (0.124347) |