Ss1.1-rret31_b10.5
|
GTCCGGCCTGCGGGTGTCCGATCTGCTGCGGCCGGAGAGGAGTGGCCGGAACTGCTTGAA
TATCTACATTTCGGTTTCTGCACCTATTAAGAGTTTTAATTCATCATGGATAATCTGTCA
GCAGAAGAACTTCAGCTGAGAGCTAACCAGGTTACTGATGAGTCTCTGGAAAGTACAAGG
AGAATCCTGGGCTTAGCCATTGAGTCTCAAGATGCAGGAATCAAGACTATCACTATGCTG
GATGAACAAGGGGAACAACTAAACCGAATAGAAGAAGGCATGGATCAAATAAACAAAGAC
ATGAGAGAGGCAGAGAAGACTTTAACAGAACTCAACAAGTGCTGTGGCCTTTGTGTATGC
CCATGTTATAGGACAAAGAACTTTGAGTCTGGTAAAGCCTATAAGGCGACATGGGGTGAT
GGTGGAGACAACTCTCCTAGCAATGTAGTATCTAAGCAGCCAGGCCGAGTGACAAATGGT
CAGCCTCAGCAAGCAGCCACAGGAGCAGCCAGCGGCGGATACATTAAACGTATAACAAAT
GATGCCAGAGAAGACGAAATGGAAGAGAACTTGACTCAAGTGGGCAGTATCCTAGGAAAT
CTAAAAAACATGGCCCTGGACATGGGCAATGAGATCGAGGCTCAAAATCGACAAATAGAA
CGGATCACAGAAAAGGCTGACACCAACAAAGACCGTATTGACAATGCCAATGCCAGAGCA
AAGAAACTCATTGACAGCTAAAGTTACTGCTGTACTTCTTTATCATATGTTCACTTCCCT
AGCTCCTCCTTCAAAGTCATTACCTTTCCAAAGTTTGAAATTTTGGTTCCACACTTCTAA
TCGAGAGAGGATGTGGAAGAAGATCTAGGAGTAACAGCCCCCCTATTATTTTTTTATTTT
CTCTTTTTCCCTTGAGAGTAGACTCCTGCTTAGTGTTCCATCTAATATTTTTTCTCAGTT
CATACTCTGAGATTGGTTTTCACACGTCATATGTAGTGTTTTTCATCCCTTCCATTTACT
TTTAGCAGGTTCTTCTGCTTTCAAGATTTGGAAATGCTGCCAAAGATAGCCATGTAAAAG
GGAAGCTGGAGGTATTGGGGGCATTCATGAGGAGGAGAGGCAAGAGATAAAAGGTTGTTA
TCTCAGTAAAATCTGCAGACCCTAAAGCAAAAAGTTGCATAACCACAGTGAAGATCTGGT
TCGGTTTCATTTTTATTTAAGTTGCAGTTATTGCCAGTTTAGGTTGATGGTTAGTTTTAG
AACTTTCGAAACAATGTTTTGGTTATACATCACAACTTTGCAACCTCTGCTCCAAAAAAG
AATAGAGTGAGTTTTAATGTGAGCTTAATTTCTGAACTCTTAGTGATTCATATATGTACA
TAGATTCTATGATCCCATTTCACATTGCACCATATAGGAACACATGTATAAATAAATGGC
TTTTTACTTCCATATTATTAATAGTATCATGGTCCCATCATAGGCCTATTAACCTCATAA
ATTTGTCATTAGTCTTTGAAGAAAAAAATATGTAAATATGTATGTATAGCATAAGAATTT
CTCTCTAAAGCAGGGTTTTAAATTTTTGGAAAAGTCTGACAAAGTATATCACGTGAATTC
AGATTTACCTCAATGCCAAGAATTATGTTTAGATAGGAAAAAAATAAACTTGTTTTGATC
TCAGGTAGAAAATAGTTAGGTTGCTTTAGGTTTTATGTAGCTTTAGACTTTTAAAAACTA
GAATTTGTGCTGTTTAAAAATGATTTAGAAAATTATGCATTTGGTTTACTTATTGATGAT
TGCACTATCGTTCTCTTACCTTTTGTATTGGACTTGCAGAATCACATTTATTTAGATCCT
CAGCAGTGTTATAAGAATGATTAGTATTTGTCACTGTTTATTTAAAAACTAGCTTCTGCA
TACTTCAAAACTATTAATGTGGATTGGTTTGACCAATAATCACTCTTTGATCCTTACGAT
TAAATTTCATAACTAACTAATGGA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GTCCGGCCTGCGGGTGTCCGATCTGCTGCGGCCGGAGAGGAGTGGCCGGAACTGCTTGAA
TATCTACATTTCGGTTTCTGCACCTATTAAGAGTTTTAATTCATCATGGATAATCTGTCA
GCAGAAGAACTTCAGCTGAGAGCTAACCAGGTTACTGATGAGTCTCTGGAAAGTACAAGG
AGAATCCTGGGCTTAGCCATTGAGTCTCAAGATGCAGGAATCAAGACTATCACTATGCTG
GATGAACAAGGGGAACAACTAAACCGAATAGAAGAAGGCATGGATCAAATAAACAAAGAC
ATGAGAGAGGCAGAGAAGACTTTAACAGAACTCAACAAGTGCTGTGGCCTTTGTGTATGC
CCATGTTATAGGACAAAGAACTTTGAGTCTGGTAAAGCCTATAAGGCGACATGGGGTGAT
GGTGGAGACAACTCTCCTAGCAATGTAGTATCTAAGCAGCCAGGCCGAGTGACAAATGGT
CAGCCTCAGCAAGCAGCCACAGGAGCAGCCAGCGGCGGATACATTAAACGTATAACAAAT
GATGCCAGAGAAGACGAAATGGAAGAGAACTTGACTCAAGTGGGCAGTATCCTAGGAAAT
CTAAAAAACATGGCCCTGGACATGGGCAATGAGATCGAGGCTCAAAATCGACAAATAGAA
CGGATCACAGAAAAGGCTGACACCAACAAAGACCGTATTGACAATGCCAATGCCAGAGCA
AAGAAACTCATTGACAGCTAAAGTTACTGCTGTACTTCTTTATCATATGTTCACTTCCCT
AGCTCCTCCTTCAAAGTCATTACCTTTCCAAAGTTTGAAATTTTGGTTCCACACTTCTAA
TCGAGAGAGGATGTGGAAGAAGATCTAGGAGTAACAGCCCCCCTATTATTTTTTTATTTT
CTCTTTTTCCCTTGAGAGTAGACTCCTGCTTAGTGTTCCATCTAATATTTTTTCTCAGTT
CATACTCTGAGATTGGTTTTCACACGTCATATGTAGTGTTTTTCATCCCTTCCATTTACT
TTTAGCAGGTTCTTCTGCTTTCAAGATTTGGAAATGCTGCCAAAGATAGCCATGTAAAAG
GGAAGCTGGAGGTATTGGGGGCATTCATGAGGAGGAGAGGCAAGAGATAAAAGGTTGTTA
TCTCAGTAAAATCTGCAGACCCTAAAGCAAAAAGTTGCATAACCACAGTGAAGATCTGGT
TCGGTTTCATTTTTATTTAAGTTGCAGTTATTGCCAGTTTAGGTTGATGGTTAGTTTTAG
AACTTTCGAAACAATGTTTTGGTTATACATCACAACTTTGCAACCTCTGCTCCAAAAAAG
AATAGAGTGAGTTTTAATGTGAGCTTAATTTCTGAACTCTTAGTGATTCATATATGTACA
TAGATTCTATGATCCCATTTCACATTGCACCATATAGGAACACATGTATAAATAAATGGC
TTTTTACTTCCATATTATTAATAGTATCATGGTCCCATCATAGGCCTATTAACCTCATAA
ATTTGTCATTAGTCTTTGAAGAAAAAAATATGTAAATATGTATGTATAGCATAAGAATTT
CTCTCTAAAGCAGGGTTTTAAATTTTTGGAAAAGTCTGACAAAGTATATCACGTGAATTC
AGATTTACCTCAATGCCAAGAATTATGTTTAGATAGGAAAAAAATAAACTTGTTTTGATC
TCAGGTAGAAAATAGTTAGGTTGCTTTAGGTTTTATGTAGCTTTAGACTTTTAAAAACTA
GAATTTGTGCTGTTTAAAAATGATTTAGAAAATTATGCATTTGGTTTACTTATTGATGAT
TGCACTATCGTTCTCTTACCTTTTGTATTGGACTTGCAGAATCACATTTATTTAGATCCT
CAGCAGTGTTATAAGAATGATTAGTATTTGTCACTGTTTATTTAAAAACTAGCTTCTGCA
TACTTCAAAACTATTAATGTGGATTGGTTTGACCAATAATCACTCTTTGATCCTTACGAT
TAAATTTCATAACTAACTAATGGA
|
|
gi|57108129|ref|XP_535442.1| |
Protein identifier
|
gi|57108129|ref|XP_535442.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-825, gnl|bosTau2|chr10 (23085357-23084534) |
|
1-825, gnl|Hg17|chr15 (40591291-40611051) |
|
1-825, gnl|Mm7|chr5 (56836531-56837283) |
| |
|
952-1191, gnl|bosTau2|chr10 (23084325-23084081) |
|
952-1191, gnl|Hg17|chr15 (40611174-40611427) |
| |
|
1213-1450, gnl|bosTau2|chr10 (23083901-23083665) |
|
1213-1450, gnl|Hg17|chr15 (40611469-40612044) |
|
1213-1450, gnl|Mm7|chr5 (56837622-56837877) |
| |
|
1755-2004, gnl|bosTau2|chr10 (23082519-23082274) |
|
1755-2004, gnl|Hg17|chr15 (40612313-40612555) |
|
1755-2004, gnl|Mm7|chr2 (120341092-120341328) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-825, gnl|bosTau2|chr10 (23085357-23084534) |
|
1-825, gnl|Hg17|chr15 (40591291-40611051) |
|
1-825, gnl|Mm7|chr5 (56836531-56837283) |
| |
|
952-1191, gnl|bosTau2|chr10 (23084325-23084081) |
|
952-1191, gnl|Hg17|chr15 (40611174-40611427) |
| |
|
1213-1450, gnl|bosTau2|chr10 (23083901-23083665) |
|
1213-1450, gnl|Hg17|chr15 (40611469-40612044) |
|
1213-1450, gnl|Mm7|chr5 (56837622-56837877) |
| |
|
1755-2004, gnl|bosTau2|chr10 (23082519-23082274) |
|
1755-2004, gnl|Hg17|chr15 (40612313-40612555) |
|
1755-2004, gnl|Mm7|chr2 (120341092-120341328) |
|
liv (1.17027) |
|
cbl (1.03318) |
|
ret (0.901133) |
|
lin (0.728014) |
|
tra (0.61546) |
|
pro (0.512033) |
|
spl (0.429553) |
|
cty (0.41632) |
|
kid (0.389206) |
|
mgm (0.360685) |
|
vin (0.332557) |
|
bfe (0.299715) |
|
fat (0.294855) |
|
ste (0.270416) |
|
bla (0.248694) |
|
mgp (0.230681) |
|
ldo (0.194005) |
|
nlu (0.191681) |
|
sin (0.174948) |
|
rec (0.17307) |
|
duo (0.172801) |
|
eye (0.170503) |
|
csp (0.161186) |
|
tbr (0.154178) |
|
lun (0.150489) |
|
isp (0.150376) |
|
lnt (0.142308) |
|
ssp (0.13552) |
|
pla (0.133672) |
|
lyg (0.133103) |
|
nmm (0.132802) |
|
sug (0.127291) |
|
ese (0.126502) |
|
spc (0.113366) |
|
eje (0.0988338) |
|
liv (1.17027) |
|
cbl (1.03318) |
|
ret (0.901133) |
|
lin (0.728014) |
|
tra (0.61546) |
|
pro (0.512033) |
|
spl (0.429553) |
|
cty (0.41632) |
|
kid (0.389206) |
|
mgm (0.360685) |
|
vin (0.332557) |
|
bfe (0.299715) |
|
fat (0.294855) |
|
ste (0.270416) |
|
bla (0.248694) |
|
mgp (0.230681) |
|
ldo (0.194005) |
|
nlu (0.191681) |
|
sin (0.174948) |
|
rec (0.17307) |
|
duo (0.172801) |
|
eye (0.170503) |
|
csp (0.161186) |
|
tbr (0.154178) |
|
lun (0.150489) |
|
isp (0.150376) |
|
lnt (0.142308) |
|
ssp (0.13552) |
|
pla (0.133672) |
|
lyg (0.133103) |
|
nmm (0.132802) |
|
sug (0.127291) |
|
ese (0.126502) |
|
spc (0.113366) |
|
eje (0.0988338) |
