Non-Coding RNA Search

Ss1.1-rret31_c5.5

Sequence:


               
               GTAGGGATTTAGGCAGAATCAAGTCCTACTGATTAAAGGTTCAATTTCTGCCAATTTTTA
GACAAATAGTTGGGCATTATCTGGTCACCACATCTGTTTACATTTAACCATAGGTCTGTT
TAAATCCATGTTATGGATCCTGAGACATAGATATAATTAGGAGAAACAGAAACAAGCTAA
CCCAGGAACAGTTTCAGATAGTTCCTTACAGAGAAGAGAATGAACATTTGACAAGTCTTT
TTACTGTATGGACCACTGAAATCCTGGAGGAAACCCAATTCTTGTTTTGTTTTCCACTGA
AATTACTAAAATAGTAAAAGATTTCATTGTTTGGGGCTTCTGTTTTCCCTTGGTGACTCA
GCTTTCTAACTTAAAATAATGATGCTACTTTCAAAGAAATTTAAAGGATTATATGTTATG
TGTATGTGAAAAGTACTGATGTTTATTATTCTCTCTTGGCTTCAAAATAAGATTGCACAT
CACCTTTTTGGTTGATGAGGTTGTCGGGTAGAAAGGAACTCTATGATTTGTATTGTTCTG
GGCACAGTCTGCATCAGAGGGATGATGAAAACAGACATAAAAGTGGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTAGGGATTTAGGCAGAATCAAGTCCTACTGATTAAAGGTTCAATTTCTGCCAATTTTTA
GACAAATAGTTGGGCATTATCTGGTCACCACATCTGTTTACATTTAACCATAGGTCTGTT
TAAATCCATGTTATGGATCCTGAGACATAGATATAATTAGGAGAAACAGAAACAAGCTAA
CCCAGGAACAGTTTCAGATAGTTCCTTACAGAGAAGAGAATGAACATTTGACAAGTCTTT
TTACTGTATGGACCACTGAAATCCTGGAGGAAACCCAATTCTTGTTTTGTTTTCCACTGA
AATTACTAAAATAGTAAAAGATTTCATTGTTTGGGGCTTCTGTTTTCCCTTGGTGACTCA
GCTTTCTAACTTAAAATAATGATGCTACTTTCAAAGAAATTTAAAGGATTATATGTTATG
TGTATGTGAAAAGTACTGATGTTTATTATTCTCTCTTGGCTTCAAAATAAGATTGCACAT
CACCTTTTTGGTTGATGAGGTTGTCGGGTAGAAAGGAACTCTATGATTTGTATTGTTCTG
GGCACAGTCTGCATCAGAGGGATGATGAAAACAGACATAAAAGTGGAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-588, gnl|bosTau2|chr3 (1024222-1024789)
               

               
               1-588, gnl|Hg17|chr8 (12925293-12925886)
               

               
               1-588, gnl|Mm7|chr8 (35280645-35281266)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-588, gnl|bosTau2|chr3 (1024222-1024789)
               

               
               1-588, gnl|Hg17|chr8 (12925293-12925886)
               

               
               1-588, gnl|Mm7|chr8 (35280645-35281266)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fco (0.157208)
               

               
               ret (0.128733)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.157208)
               

               
               ret (0.128733)

	1-588, gnl\|bosTau2\|chr3 (1024222-1024789)
	1-588, gnl\|Hg17\|chr8 (12925293-12925886)
	1-588, gnl\|Mm7\|chr8 (35280645-35281266)