Non-Coding RNA Search

Ss1.1-rret31_f22.5

Sequence:


               
               CTTTCGACATGGTGGTGGCGAAGGCGCCTCCCCAGCTCTGTCTCCTGTCCCATGTGTCCC
CAGGTCTGTCATAGTCAGTGAAAGTTCAGTGGTGCCCCATAAGGATTTTTTTGCCCACTG
GGAAACTCAGAAATACTCCATTATCCCCAAGCAGTGGGAGCAGTGCACCCACCGGCATCT
ATTTCATACTCATTTCTCGTGTGAGTAGACAGAAGCCTACTTTTCAGAAAATAGGTGTTG
TCTACTTCACAAGAACCACTTTTTTCTAAAATAAGACAAAAGGTGGCTTTGCATTTTCTG
ATTAAACAACTGCATCCTTGTCTCCTCTGCTTCACTTCAGGAGTGTTTATTCCTGTGATT
GTAGATTTTGTTGATATTCTGCCTGGGAAAATGTGATGCTTTTCTTGAGGGGATTAGTGG
ACAATTCAAAATCATACATGAAGGTTGTTTTTCTTTTGAGTCTAAAAATTCACCTCATAT
CTCTTCTATGAGAGTCTTTCAGAATATCTTTGATAGATGGTCGGAAACATTTGAAATCAT
TGCTTTCACTACATGATGTTTTTGAGGGGGGAGGGGTGAAGGACAGACCAGGTTTAAATT
GATAATCAGAAAACATCATCTCTCACACCCCAAATTTGTATGGAGGGTGAAGACAAAGAG
ATAGAGCTTGAGATTTTTCCTCCTGTGTGAGCACCTACTGACAAAATGTAGAGGCCATTC
AACCGTCAAGAAACATTTGTTTTATAGCAGGTAACATGATGTATAAATTACTGCATCGCT
TTAATTCGTATAACTGCTGATCTTTGTTTGCATGATATGCTTTGTTAGATACATTAATTG
TAGTTTGGAAGCAAGCGTGTATGAATAAAGATAATGATCATTCAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTCGACATGGTGGTGGCGAAGGCGCCTCCCCAGCTCTGTCTCCTGTCCCATGTGTCCC
CAGGTCTGTCATAGTCAGTGAAAGTTCAGTGGTGCCCCATAAGGATTTTTTTGCCCACTG
GGAAACTCAGAAATACTCCATTATCCCCAAGCAGTGGGAGCAGTGCACCCACCGGCATCT
ATTTCATACTCATTTCTCGTGTGAGTAGACAGAAGCCTACTTTTCAGAAAATAGGTGTTG
TCTACTTCACAAGAACCACTTTTTTCTAAAATAAGACAAAAGGTGGCTTTGCATTTTCTG
ATTAAACAACTGCATCCTTGTCTCCTCTGCTTCACTTCAGGAGTGTTTATTCCTGTGATT
GTAGATTTTGTTGATATTCTGCCTGGGAAAATGTGATGCTTTTCTTGAGGGGATTAGTGG
ACAATTCAAAATCATACATGAAGGTTGTTTTTCTTTTGAGTCTAAAAATTCACCTCATAT
CTCTTCTATGAGAGTCTTTCAGAATATCTTTGATAGATGGTCGGAAACATTTGAAATCAT
TGCTTTCACTACATGATGTTTTTGAGGGGGGAGGGGTGAAGGACAGACCAGGTTTAAATT
GATAATCAGAAAACATCATCTCTCACACCCCAAATTTGTATGGAGGGTGAAGACAAAGAG
ATAGAGCTTGAGATTTTTCCTCCTGTGTGAGCACCTACTGACAAAATGTAGAGGCCATTC
AACCGTCAAGAAACATTTGTTTTATAGCAGGTAACATGATGTATAAATTACTGCATCGCT
TTAATTCGTATAACTGCTGATCTTTGTTTGCATGATATGCTTTGTTAGATACATTAATTG
TAGTTTGGAAGCAAGCGTGTATGAATAAAGATAATGATCATTCAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               213-881, gnl|bosTau2|chr19 (51158368-51157712)
               

               
               213-881, gnl|Hg17|chr17 (62236664-62237321)
               

               
               213-881, gnl|Mm7|chr11 (108043091-108042434)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               213-881, gnl|bosTau2|chr19 (51158368-51157712)
               

               
               213-881, gnl|Hg17|chr17 (62236664-62237321)
               

               
               213-881, gnl|Mm7|chr11 (108043091-108042434)

Expressed library(ies): 21 entry(ies)

More info

Expressed library(ies): 21 entry(ies)

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               ste (0.405625)
               

               
               sin (0.349895)
               

               
               spc (0.340097)
               

               
               ret (0.257467)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               ldo (0.194005)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               cst (0.140036)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               med (0.116252)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 21 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ste (0.405625)
               

               
               sin (0.349895)
               

               
               spc (0.340097)
               

               
               ret (0.257467)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               ldo (0.194005)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               cst (0.140036)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               med (0.116252)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	213-881, gnl\|bosTau2\|chr19 (51158368-51157712)
	213-881, gnl\|Hg17\|chr17 (62236664-62237321)
	213-881, gnl\|Mm7\|chr11 (108043091-108042434)

	ste (0.405625)
	sin (0.349895)
	spc (0.340097)
	ret (0.257467)
	fcc (0.197785)
	col (0.195008)
	ldo (0.194005)
	cmu (0.186393)
	sto (0.179824)
	ton (0.1755)
	fbs (0.175346)
	fhi (0.169578)
	ski (0.146735)
	liv (0.146284)
	lin (0.145603)
	cst (0.140036)
	ova (0.129132)
	bla (0.124347)
	med (0.116252)
	jej (0.0989218)
	eje (0.0988338)