Non-Coding RNA Search

Ss1.1-rret31_n22.5

Sequence:


               
               GCCTAAGAAGTGTCAAAGCAAGTGATTTGTGTCTCCTTATACATTGTTGTAGTCACTTAA
AATATATTAAATCTAGAGAATTCTTTGTATATATTCAGGTAAGGAACTTTGGTAATGATC
TGGAAATGTTTAAAGCAATGTTTCTTAGCATTTTATGAGTAGTAGAAAGGTAAAGGTCTG
TTGTTGTTAATGTGATGTTTACCATGTGCCTGTGGTAAAGAAGAGGAACATGAAAACCCA
GCTGGCCTGTACCAATGTCACACAGTACTGCTGTTTACTGAAGAATCTGTGAGGTAACCT
CTGAACACATCTTCATTTTTGTAGGACTGTGTCTTGCCTGTAAAAACCTATTGCTTGGGT
GGAAATTTGATGGCCAGGATTACATAATTTCCAAAGAGGTTTCATTGACCATTTAGATCA
GAAACTTTTCCCCCCAGTGTTACATGCTGCAATATTTAATAACTGGAGATTAGCATATGG
GTTATTTTTTCAGTCTGTGCTTTGAATTTTTTTATTGTGTGTTATTTAAAGTATTACAGA
TGTAGCTAGGATAACTATACCTTTATGCACATAAATTTGTATATTAATTTGTAGAAAATA
TTTTCTTTTTATATTTCCTTACCATAAGGTGCTTTTTTTCATCAGGAAAATTTTGCTTCA
TATGTGTTGGCAAGAAAGACATTCTAGAGTTTCTTTTTAAGAGATATAGTTGACAAGTTT
ATAAATGGTACAGTTATTTTCAGAGTTCTCTTCAGCTCTAAGAAAATGAGTTCAGAAGTG
GAAATCATCAATGTAAGAAGAATATCTGAATTCTATTATTAGTATATATTATGTGTAGCA
CCTGTTTTTACCATTTCCATTCTTACCTCTAGAATATCAGCTGATCTCACTAAGATTGAG
CATTTAACATAAACGCTCATTTCAAAAGATTAGATTTTGAAGGGAAATTGAGATCAACAT
GTTGTGATTTAATCTGTGATGTGAAAAAATATTTATTATCCTTGGTGCTTATTTTCCCCT
GATGCACAAATACTTATAAACCACTTGAAATGACCTAAACTGTAAACCAAACAGTACATC
CTGATAAGAATTCTATCTATTGCCCGTCATATTACTTAAATTGCTAAAGCTTTAGCTTGA
GATTTACATTTAGAAAAATTACTGACTTCTCATATGAATGCAGCTATTAAAATTCTTCAG
AAGAGACCCTCCTAACTTTAAATCATTGTATGTGAACTGGCTTTTAGAAAATAAGCATAT
TACATGTTACTTTTAAAAGGTACCAGATGCAAAAGTCACAAATATATACAATTATATAAG
TTCATATACTTCACATGAATGTAAATGTATTAAATGGAGACATGTCTTGCAAATAGTTGA
ATGTACCTAAGCTTTCTGTATGTGAAAATGTGGTTAATGTGCTCATTGTTGGAGTAAAGA
ACCTACTTTTATTTTTTAAGTGGTACTGAATTAAAGTATTTTATTTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCTAAGAAGTGTCAAAGCAAGTGATTTGTGTCTCCTTATACATTGTTGTAGTCACTTAA
AATATATTAAATCTAGAGAATTCTTTGTATATATTCAGGTAAGGAACTTTGGTAATGATC
TGGAAATGTTTAAAGCAATGTTTCTTAGCATTTTATGAGTAGTAGAAAGGTAAAGGTCTG
TTGTTGTTAATGTGATGTTTACCATGTGCCTGTGGTAAAGAAGAGGAACATGAAAACCCA
GCTGGCCTGTACCAATGTCACACAGTACTGCTGTTTACTGAAGAATCTGTGAGGTAACCT
CTGAACACATCTTCATTTTTGTAGGACTGTGTCTTGCCTGTAAAAACCTATTGCTTGGGT
GGAAATTTGATGGCCAGGATTACATAATTTCCAAAGAGGTTTCATTGACCATTTAGATCA
GAAACTTTTCCCCCCAGTGTTACATGCTGCAATATTTAATAACTGGAGATTAGCATATGG
GTTATTTTTTCAGTCTGTGCTTTGAATTTTTTTATTGTGTGTTATTTAAAGTATTACAGA
TGTAGCTAGGATAACTATACCTTTATGCACATAAATTTGTATATTAATTTGTAGAAAATA
TTTTCTTTTTATATTTCCTTACCATAAGGTGCTTTTTTTCATCAGGAAAATTTTGCTTCA
TATGTGTTGGCAAGAAAGACATTCTAGAGTTTCTTTTTAAGAGATATAGTTGACAAGTTT
ATAAATGGTACAGTTATTTTCAGAGTTCTCTTCAGCTCTAAGAAAATGAGTTCAGAAGTG
GAAATCATCAATGTAAGAAGAATATCTGAATTCTATTATTAGTATATATTATGTGTAGCA
CCTGTTTTTACCATTTCCATTCTTACCTCTAGAATATCAGCTGATCTCACTAAGATTGAG
CATTTAACATAAACGCTCATTTCAAAAGATTAGATTTTGAAGGGAAATTGAGATCAACAT
GTTGTGATTTAATCTGTGATGTGAAAAAATATTTATTATCCTTGGTGCTTATTTTCCCCT
GATGCACAAATACTTATAAACCACTTGAAATGACCTAAACTGTAAACCAAACAGTACATC
CTGATAAGAATTCTATCTATTGCCCGTCATATTACTTAAATTGCTAAAGCTTTAGCTTGA
GATTTACATTTAGAAAAATTACTGACTTCTCATATGAATGCAGCTATTAAAATTCTTCAG
AAGAGACCCTCCTAACTTTAAATCATTGTATGTGAACTGGCTTTTAGAAAATAAGCATAT
TACATGTTACTTTTAAAAGGTACCAGATGCAAAAGTCACAAATATATACAATTATATAAG
TTCATATACTTCACATGAATGTAAATGTATTAAATGGAGACATGTCTTGCAAATAGTTGA
ATGTACCTAAGCTTTCTGTATGTGAAAATGTGGTTAATGTGCTCATTGTTGGAGTAAAGA
ACCTACTTTTATTTTTTAAGTGGTACTGAATTAAAGTATTTTATTTCA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               3-1487, gnl|bosTau2|chr7 (64984591-64986097)
               

               
               3-1487, gnl|Hg17|chr5 (102565284-102566799)
               

               
               3-1487, gnl|Mm7|chr1 (97559835-97558365)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-1487, gnl|bosTau2|chr7 (64984591-64986097)
               

               
               3-1487, gnl|Hg17|chr5 (102565284-102566799)
               

               
               3-1487, gnl|Mm7|chr1 (97559835-97558365)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

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               ret (1.02987)
               

               
               tra (0.369276)
               

               
               fco (0.314416)
               

               
               isp (0.300752)
               

               
               bfe (0.299715)
               

               
               lin (0.291206)
               

               
               spl (0.286369)
               

               
               liv (0.146284)
               

               
               lnt (0.142308)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (1.02987)
               

               
               tra (0.369276)
               

               
               fco (0.314416)
               

               
               isp (0.300752)
               

               
               bfe (0.299715)
               

               
               lin (0.291206)
               

               
               spl (0.286369)
               

               
               liv (0.146284)
               

               
               lnt (0.142308)

	3-1487, gnl\|bosTau2\|chr7 (64984591-64986097)
	3-1487, gnl\|Hg17\|chr5 (102565284-102566799)
	3-1487, gnl\|Mm7\|chr1 (97559835-97558365)

	ret (1.02987)
	tra (0.369276)
	fco (0.314416)
	isp (0.300752)
	bfe (0.299715)
	lin (0.291206)
	spl (0.286369)
	liv (0.146284)
	lnt (0.142308)