Non-Coding RNA Search

Ss1.1-rret32_e15.5

Sequence:


               
               CTATATATGGTATAGACAAAGCTCAAAACTATGTACAGGAAAAAAGCCTGACTATTTCTT
TTAGAAGAAGGCTGAAAAGAGAATTTTCAGAATTGTTCATGTCTTCAGTTCATTTGGTCA
TAACTTTGCTATTGTAATATGTGAATCCCAGTTTATTTAAGCTATTCTCTTTTATACTGT
GTTAATTTAACGTTCATGTGCAGTTAGTACCACTTTTGTTACTAAAACTAGCATTTACCA
TTTTTCACATTTTCCACTTTACACTTTCTCCAAAATTATCCACTTTTCTATGCATTCTAA
AGTTGATTTGAAAAGCTTCAGAGTGGGGGTCATTTAAAATTCTTCTTTTGGTTCAGTTAA
CCATTAGGTTATAGTTAATTGAAAATTAAAGTATGGTTTAAAGCTCAGTCTGTTAACACT
GAATTGATTGTGTTTGTTTTTGCCAAGGGTTTAGATATGTTTTTAAATATTAGAAAAATA
ATTCTAAAAGCAGCATAATATAATTAAAAGTTTTTTTCTGGTAAGTTACTGGAAGGTTTC
ACTGTTTAGGGACCTATCATATAAGAGACTTCTTAAAGGATGAAAAGAATATTAGATAGT
CTCATAATTATGGGTAAACATAAAGGCATTCTCTTTTACAGTTTTAAATAAAATTCCATG
TACACACATGTTGCCATCGTTTCATTTAAGCTTCATTACTTGTAGTTATTACAATATCGT
ACTTAATGGTATCTAGATTAGCAGTATACAGAAGCATAGTTTCAAATTTTCAGTAGATTT
ATGGGAAATCAAATCTTATTCAACAGATACTTATTAGGATATATGATTAATTTTAGAACA
AAATTCCAGGCACAATATGTTTTCATTTGAAATGGTATTTGTTAGTAGTGCTTTTTTCCC
CCCTAATATTTATAGTGTAAATAATGTAACAGCAATCTAACTTAGCCAAAAAGCAGCTTT
TATTTTCCATACTGTATGTAAATAATGTAGACCTTTTTTTTGAGGTACTGGAATTTAATT
TCTAATATCTATTAGATAGAAACAAAGGGAACAATTGGAGTAAGAACTTAGGCCTTAGCT
TCCATGGTGATTTTTAGTTTTTTATACAGTAATAATTGTGATGCTATTTGTCAACTGGAT
ATAAATATATATATAATTTTAAAAAGTCAAAAGTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTATATATGGTATAGACAAAGCTCAAAACTATGTACAGGAAAAAAGCCTGACTATTTCTT
TTAGAAGAAGGCTGAAAAGAGAATTTTCAGAATTGTTCATGTCTTCAGTTCATTTGGTCA
TAACTTTGCTATTGTAATATGTGAATCCCAGTTTATTTAAGCTATTCTCTTTTATACTGT
GTTAATTTAACGTTCATGTGCAGTTAGTACCACTTTTGTTACTAAAACTAGCATTTACCA
TTTTTCACATTTTCCACTTTACACTTTCTCCAAAATTATCCACTTTTCTATGCATTCTAA
AGTTGATTTGAAAAGCTTCAGAGTGGGGGTCATTTAAAATTCTTCTTTTGGTTCAGTTAA
CCATTAGGTTATAGTTAATTGAAAATTAAAGTATGGTTTAAAGCTCAGTCTGTTAACACT
GAATTGATTGTGTTTGTTTTTGCCAAGGGTTTAGATATGTTTTTAAATATTAGAAAAATA
ATTCTAAAAGCAGCATAATATAATTAAAAGTTTTTTTCTGGTAAGTTACTGGAAGGTTTC
ACTGTTTAGGGACCTATCATATAAGAGACTTCTTAAAGGATGAAAAGAATATTAGATAGT
CTCATAATTATGGGTAAACATAAAGGCATTCTCTTTTACAGTTTTAAATAAAATTCCATG
TACACACATGTTGCCATCGTTTCATTTAAGCTTCATTACTTGTAGTTATTACAATATCGT
ACTTAATGGTATCTAGATTAGCAGTATACAGAAGCATAGTTTCAAATTTTCAGTAGATTT
ATGGGAAATCAAATCTTATTCAACAGATACTTATTAGGATATATGATTAATTTTAGAACA
AAATTCCAGGCACAATATGTTTTCATTTGAAATGGTATTTGTTAGTAGTGCTTTTTTCCC
CCCTAATATTTATAGTGTAAATAATGTAACAGCAATCTAACTTAGCCAAAAAGCAGCTTT
TATTTTCCATACTGTATGTAAATAATGTAGACCTTTTTTTTGAGGTACTGGAATTTAATT
TCTAATATCTATTAGATAGAAACAAAGGGAACAATTGGAGTAAGAACTTAGGCCTTAGCT
TCCATGGTGATTTTTAGTTTTTTATACAGTAATAATTGTGATGCTATTTGTCAACTGGAT
ATAAATATATATATAATTTTAAAAAGTCAAAAGTAC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-1171, gnl|bosTau2|chr21 (28815019-28816202)
               

               
               1-1171, gnl|Hg17|chr14 (31695765-31696965)
               

               
               1-1171, gnl|Mm7|chr12 (50582102-50583337)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1171, gnl|bosTau2|chr21 (28815019-28816202)
               

               
               1-1171, gnl|Hg17|chr14 (31695765-31696965)
               

               
               1-1171, gnl|Mm7|chr12 (50582102-50583337)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

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               amn (0.417711)
               

               
               ret (0.3862)
               

               
               tra (0.369276)
               

               
               sag (0.182715)
               

               
               fco (0.157208)
               

               
               lin (0.145603)
               

               
               nca (0.136874)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               ret (0.3862)
               

               
               tra (0.369276)
               

               
               sag (0.182715)
               

               
               fco (0.157208)
               

               
               lin (0.145603)
               

               
               nca (0.136874)

	1-1171, gnl\|bosTau2\|chr21 (28815019-28816202)
	1-1171, gnl\|Hg17\|chr14 (31695765-31696965)
	1-1171, gnl\|Mm7\|chr12 (50582102-50583337)

	amn (0.417711)
	ret (0.3862)
	tra (0.369276)
	sag (0.182715)
	fco (0.157208)
	lin (0.145603)
	nca (0.136874)