Non-Coding RNA Search

Ss1.1-rret32_i5.5

Sequence:


               
               AGCGTTCAACCATACCTGGAGTCTGTCAGGGTGTTCTCCACTGATCCACAAGGGATAAAC
AAATCTACCAGAGCTTGAATGTGATTTATTTTAGGGATCAACCCAGGGAGGGGAAAGCCC
TTGGGATTTTTTTTCTTTTTAAACTAGTGACCAGTTAGTTTACTAAAGTAAAAAGCACTC
AGAAAAACAGAGATAGAAAGCTAAAGGAAATATAACACTGTACCACTTGGGACTCTGAAA
CTGGAATGGTGAACTGAATAAAGAAAAGAACACATGACCTGGGCTTGAGTTCCCTCAGTT
CACAGTTCCTGACCCCTTCCTGATCCTTTCCTAAAATAACCAAGTTATTTACTTACAAGT
TCACAGCTTTTAGGAAAAAAGAGATAGTTGGGAAACATCTAGTTTTGAATTAGATCTAAA
TCTTGAAAGATTAACTCTTGGCAGCTGTTAAATCAAATGGACCCACGAATCAGAGGAATT
TTGTCAAGCAAAACCAGTAAGTTAGAATAGAGAACTTTAACAATTCCACAGTTTTCTTCC
TTTCTTCTCCATGACACAGAGTGATGAGAAACTGTTCTTTGAAATACCTCCAAAGGTACT
GTATTGTGTCCCTTTACCCTCAAGTAGCCCTCTTTATGCATTTTTGCTCAGGCAACCAAG
GACATAGAGTATTGGCAGAAACATGGAGTGCTTTTGTATAGGCCATCTGTACATAAAAGT
GTAATTATTTATTTAATTTTCCCATTTGTATCATATTAAAGCTTTGTACAGTGTTTTAAG
TTCTGTTTTAAAATTATTTTGTATTTTATTTTTATAATCTAGTAATAAAATATTCATTCC
GCATGCAAACTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCGTTCAACCATACCTGGAGTCTGTCAGGGTGTTCTCCACTGATCCACAAGGGATAAAC
AAATCTACCAGAGCTTGAATGTGATTTATTTTAGGGATCAACCCAGGGAGGGGAAAGCCC
TTGGGATTTTTTTTCTTTTTAAACTAGTGACCAGTTAGTTTACTAAAGTAAAAAGCACTC
AGAAAAACAGAGATAGAAAGCTAAAGGAAATATAACACTGTACCACTTGGGACTCTGAAA
CTGGAATGGTGAACTGAATAAAGAAAAGAACACATGACCTGGGCTTGAGTTCCCTCAGTT
CACAGTTCCTGACCCCTTCCTGATCCTTTCCTAAAATAACCAAGTTATTTACTTACAAGT
TCACAGCTTTTAGGAAAAAAGAGATAGTTGGGAAACATCTAGTTTTGAATTAGATCTAAA
TCTTGAAAGATTAACTCTTGGCAGCTGTTAAATCAAATGGACCCACGAATCAGAGGAATT
TTGTCAAGCAAAACCAGTAAGTTAGAATAGAGAACTTTAACAATTCCACAGTTTTCTTCC
TTTCTTCTCCATGACACAGAGTGATGAGAAACTGTTCTTTGAAATACCTCCAAAGGTACT
GTATTGTGTCCCTTTACCCTCAAGTAGCCCTCTTTATGCATTTTTGCTCAGGCAACCAAG
GACATAGAGTATTGGCAGAAACATGGAGTGCTTTTGTATAGGCCATCTGTACATAAAAGT
GTAATTATTTATTTAATTTTCCCATTTGTATCATATTAAAGCTTTGTACAGTGTTTTAAG
TTCTGTTTTAAAATTATTTTGTATTTTATTTTTATAATCTAGTAATAAAATATTCATTCC
GCATGCAAACTC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               11-852, gnl|bosTau2|chr26 (30149100-30149953)
               

               
               11-852, gnl|Hg17|chr15 (40819344-40818462)
               

               
               11-852, gnl|Mm7|chr2 (120474850-120473662)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-852, gnl|bosTau2|chr26 (30149100-30149953)
               

               
               11-852, gnl|Hg17|chr15 (40819344-40818462)
               

               
               11-852, gnl|Mm7|chr2 (120474850-120473662)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

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               ret (0.3862)
               

               
               cbe (0.239234)
               

               
               cty (0.20816)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               nlu (0.191681)
               

               
               sin (0.174948)
               

               
               fco (0.157208)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               kid (0.129735)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.3862)
               

               
               cbe (0.239234)
               

               
               cty (0.20816)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               nlu (0.191681)
               

               
               sin (0.174948)
               

               
               fco (0.157208)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               kid (0.129735)

	11-852, gnl\|bosTau2\|chr26 (30149100-30149953)
	11-852, gnl\|Hg17\|chr15 (40819344-40818462)
	11-852, gnl\|Mm7\|chr2 (120474850-120473662)

	ret (0.3862)
	cbe (0.239234)
	cty (0.20816)
	tes (0.207814)
	aor (0.195274)
	nlu (0.191681)
	sin (0.174948)
	fco (0.157208)
	ski (0.146735)
	hyp (0.142837)
	hlv (0.139256)
	kid (0.129735)