Non-Coding RNA Search

Ss1.1-rret32_i9.5

Sequence:


               
               CTCATCTTCGCTACCTCCGTCTAGATGGAAATGAGATCAAACCACCAATCCCAATGGATT
TAATGGACTGCTTCAGGCTCCTTCAGGCTGTCATTATTTAAACATGTCTTTAACAGTCTA
AAATTTACTTAAGGAGATAATATCTTGGTTACTAGTCATAGGCTAAAGACAAAAAAAAAT
CAACTTTCTAATGCTTGGTGCCACCATTTTTATTTGTACAGCTTATTTTTTTTCCTATTC
AAAGTTGCTTTTGCCAATGATATGTTATCACAGCCTTCTTTTCTTTAATTAAGAAAAACA
GACACAGAGTTAAGATAGTTTATCAACTCAAAGATGATTCCTTTTTAGTCTCTTTCACTA
AGCTTACTAACACCAAATAATGGAAATACACTGTTATGTAATAGAAAGGATATATTTGTT
TGCAAATGTTCAAAATGCTTATGCAGGTACTATATTTACAGTATAAACACAGTAATCTAA
CAGGAGGTAGGAATTTCTAGAGAAAGTTCTAGTCATTTAATACCAAATAACCAAATAGCA
CTATTAGTTTAGTACTATTTCTTACAGCTACTGTCTTTAAATGTGGTACAGTGTACTCTA
GCCATTAAAGAAGTCCTAGATTTATTATAACACATTACTCCAGGATCTTAGCGTTTTAAC
ACTTGAAATCCCCTTGAATCAAAGCAAATTGTTCAGATCTTATATTCACCAGTGGTTTGG
GGATTTTCTAAATAAAAAGAGTGAGTGCTTTCTAACAAAACAGAAATAAAATATTTATTT
CAGGGGGCTTATTCACAAATTTTACTAAGATTGTATTTTTAATAAAAAACTGTTATAGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCATCTTCGCTACCTCCGTCTAGATGGAAATGAGATCAAACCACCAATCCCAATGGATT
TAATGGACTGCTTCAGGCTCCTTCAGGCTGTCATTATTTAAACATGTCTTTAACAGTCTA
AAATTTACTTAAGGAGATAATATCTTGGTTACTAGTCATAGGCTAAAGACAAAAAAAAAT
CAACTTTCTAATGCTTGGTGCCACCATTTTTATTTGTACAGCTTATTTTTTTTCCTATTC
AAAGTTGCTTTTGCCAATGATATGTTATCACAGCCTTCTTTTCTTTAATTAAGAAAAACA
GACACAGAGTTAAGATAGTTTATCAACTCAAAGATGATTCCTTTTTAGTCTCTTTCACTA
AGCTTACTAACACCAAATAATGGAAATACACTGTTATGTAATAGAAAGGATATATTTGTT
TGCAAATGTTCAAAATGCTTATGCAGGTACTATATTTACAGTATAAACACAGTAATCTAA
CAGGAGGTAGGAATTTCTAGAGAAAGTTCTAGTCATTTAATACCAAATAACCAAATAGCA
CTATTAGTTTAGTACTATTTCTTACAGCTACTGTCTTTAAATGTGGTACAGTGTACTCTA
GCCATTAAAGAAGTCCTAGATTTATTATAACACATTACTCCAGGATCTTAGCGTTTTAAC
ACTTGAAATCCCCTTGAATCAAAGCAAATTGTTCAGATCTTATATTCACCAGTGGTTTGG
GGATTTTCTAAATAAAAAGAGTGAGTGCTTTCTAACAAAACAGAAATAAAATATTTATTT
CAGGGGGCTTATTCACAAATTTTACTAAGATTGTATTTTTAATAAAAAACTGTTATAGTA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-505, gnl|bosTau2|chr5 (13888685-13889184)
               

               
               1-505, gnl|Hg17|chr12 (89947691-89947179)
               

               
               1-505, gnl|Mm7|chr10 (97175362-97175852)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-505, gnl|bosTau2|chr5 (13888685-13889184)
               

               
               1-505, gnl|Hg17|chr12 (89947691-89947179)
               

               
               1-505, gnl|Mm7|chr10 (97175362-97175852)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

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               ret (0.901133)
               

               
               ski (0.29347)
               

               
               eye (0.170503)
               

               
               tbr (0.154178)
               

               
               fat (0.147427)
               

               
               pty (0.142714)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.901133)
               

               
               ski (0.29347)
               

               
               eye (0.170503)
               

               
               tbr (0.154178)
               

               
               fat (0.147427)
               

               
               pty (0.142714)

	1-505, gnl\|bosTau2\|chr5 (13888685-13889184)
	1-505, gnl\|Hg17\|chr12 (89947691-89947179)
	1-505, gnl\|Mm7\|chr10 (97175362-97175852)

	ret (0.901133)
	ski (0.29347)
	eye (0.170503)
	tbr (0.154178)
	fat (0.147427)
	pty (0.142714)