Non-Coding RNA Search

Ss1.1-rret32_o21.5

Sequence:


               
               GCCGGGCCCTTCCTCCACACGAAGCCCCGCCCCCCGCAGACTCAGCCTCCACGAACTGCT
GACGCCCTCAAAGCATGTCACTGTCCGTGATACATTTTTATTCTATGGAACTCTAGCCCA
TTCGTGTCCTGTTGACCTTTTGCTGCATGAGTCATAAAATATGAAACTGGTCTTATGGTT
TTTGAAATGTAGCCAGCATTTGTAAGGCTAAACCTTTTTCATAAACTGAATTTCAGTGAA
TAACCAAGCCACCGTTCCTCTTCAAAAGGAGTGTGCTTAAAGACATTTGAATCTCTCTGC
CCTTTCCAATGGCTATGGCATCAGGTTCTAAAATAAGCTCGTAATTTTTCCTGTTATTTT
AATAATATGGAAATATTAGCATAGTGTTTCTTTTGATAGTGATAGACTATAATCCATATT
TAAATTTTATAGAGAAGAAATTTTATTGTACTGTGATGTAGATATTTATTATCCAGGTAA
GGATTTGCCCGGTGTGTATTTTTTACAATTGAAACCTTTTACTTTAATCTTTAAAAAAAA
AAAATACATTAAAAACACAACACACACACGCAAAAAAGACTGAGGGGGGAAAAAAGGTTT
GGCCTTATCACAGAATTTTTACTGTGCTGTACAAATGTTTGCAAATGCAAAAAGTGTGCA
TTTCTAGTGTATTTCTACATTACTTAATGCCGCCTTCAAGAGCAATATCGTGCAGGTAAA
ACGCTGTTTGTGGCTTTCTGTTGCACAGTTAAAGCTGACCCACCTTATGCACAAGACAAT
CAGATTCAAAATCTGTCCTCCTCAGGATGCAGATAACTCTCATGTAAATTATGGAGCACA
ATGCAAGACAAAGGAAGACACTTTAATTACATGTGTATCACTAACATGGGAGATATCAGG
GCATGAATGAGCGGACCTTATGCCACTTCATTCTTTCGGTTCTTCCTAATTGGCATTTTC
CATTTGATTATAGAGCCAAATGAGCTATCCAGGCTTTCTTCAGAAAAAAACAACTCTTTC
CCCCACCATGTTCTCATGCCCTGAGAGTCAGAAAAGTACAACAGAGTAGGAAGAGATTTA
CCGTCACCTGAAGATTTGTGTTTTGTAAACAGTGTTAAGTGATATTGCTAGGTTGGTCAT
ATTTTTTCAGCCTAAAACTCTATTGAAATCTGTGATCAAAATGTTTTAAACTATCCAAAA
AGAAAATTTGTATATTTGGGAAAAAAATGGATTTTTACATAGCTTTTGTATGCAGATATT
AAATTGTAATTATGACTATAGCGGGCGTAGATAAACTCATAAGCTACAATTCTAAAAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCGGGCCCTTCCTCCACACGAAGCCCCGCCCCCCGCAGACTCAGCCTCCACGAACTGCT
GACGCCCTCAAAGCATGTCACTGTCCGTGATACATTTTTATTCTATGGAACTCTAGCCCA
TTCGTGTCCTGTTGACCTTTTGCTGCATGAGTCATAAAATATGAAACTGGTCTTATGGTT
TTTGAAATGTAGCCAGCATTTGTAAGGCTAAACCTTTTTCATAAACTGAATTTCAGTGAA
TAACCAAGCCACCGTTCCTCTTCAAAAGGAGTGTGCTTAAAGACATTTGAATCTCTCTGC
CCTTTCCAATGGCTATGGCATCAGGTTCTAAAATAAGCTCGTAATTTTTCCTGTTATTTT
AATAATATGGAAATATTAGCATAGTGTTTCTTTTGATAGTGATAGACTATAATCCATATT
TAAATTTTATAGAGAAGAAATTTTATTGTACTGTGATGTAGATATTTATTATCCAGGTAA
GGATTTGCCCGGTGTGTATTTTTTACAATTGAAACCTTTTACTTTAATCTTTAAAAAAAA
AAAATACATTAAAAACACAACACACACACGCAAAAAAGACTGAGGGGGGAAAAAAGGTTT
GGCCTTATCACAGAATTTTTACTGTGCTGTACAAATGTTTGCAAATGCAAAAAGTGTGCA
TTTCTAGTGTATTTCTACATTACTTAATGCCGCCTTCAAGAGCAATATCGTGCAGGTAAA
ACGCTGTTTGTGGCTTTCTGTTGCACAGTTAAAGCTGACCCACCTTATGCACAAGACAAT
CAGATTCAAAATCTGTCCTCCTCAGGATGCAGATAACTCTCATGTAAATTATGGAGCACA
ATGCAAGACAAAGGAAGACACTTTAATTACATGTGTATCACTAACATGGGAGATATCAGG
GCATGAATGAGCGGACCTTATGCCACTTCATTCTTTCGGTTCTTCCTAATTGGCATTTTC
CATTTGATTATAGAGCCAAATGAGCTATCCAGGCTTTCTTCAGAAAAAAACAACTCTTTC
CCCCACCATGTTCTCATGCCCTGAGAGTCAGAAAAGTACAACAGAGTAGGAAGAGATTTA
CCGTCACCTGAAGATTTGTGTTTTGTAAACAGTGTTAAGTGATATTGCTAGGTTGGTCAT
ATTTTTTCAGCCTAAAACTCTATTGAAATCTGTGATCAAAATGTTTTAAACTATCCAAAA
AGAAAATTTGTATATTTGGGAAAAAAATGGATTTTTACATAGCTTTTGTATGCAGATATT
AAATTGTAATTATGACTATAGCGGGCGTAGATAAACTCATAAGCTACAATTCTAAAAAAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               603-722, + strand, RNAz p=0.805251

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               603-722, + strand, RNAz p=0.805251

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               28-1320, gnl|bosTau2|chr27 (28690703-28691988)
               

               
               28-1320, gnl|Hg17|chr3 (24136039-24134726)
               

               
               28-1320, gnl|Mm7|chr14 (15851203-15852498)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               28-1320, gnl|bosTau2|chr27 (28690703-28691988)
               

               
               28-1320, gnl|Hg17|chr3 (24136039-24134726)
               

               
               28-1320, gnl|Mm7|chr14 (15851203-15852498)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               aor (0.585823)
               

               
               mgp (0.461361)
               

               
               ret (0.3862)
               

               
               gul (0.355177)
               

               
               isp (0.300752)
               

               
               lyg (0.266205)
               

               
               spc (0.226732)
               

               
               fcc (0.197785)
               

               
               fty (0.17584)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               tra (0.123092)
               

               
               jca (0.11396)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.585823)
               

               
               mgp (0.461361)
               

               
               ret (0.3862)
               

               
               gul (0.355177)
               

               
               isp (0.300752)
               

               
               lyg (0.266205)
               

               
               spc (0.226732)
               

               
               fcc (0.197785)
               

               
               fty (0.17584)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               tra (0.123092)
               

               
               jca (0.11396)

	28-1320, gnl\|bosTau2\|chr27 (28690703-28691988)
	28-1320, gnl\|Hg17\|chr3 (24136039-24134726)
	28-1320, gnl\|Mm7\|chr14 (15851203-15852498)

	aor (0.585823)
	mgp (0.461361)
	ret (0.3862)
	gul (0.355177)
	isp (0.300752)
	lyg (0.266205)
	spc (0.226732)
	fcc (0.197785)
	fty (0.17584)
	fco (0.157208)
	tbr (0.154178)
	bfe (0.149858)
	fat (0.147427)
	tra (0.123092)
	jca (0.11396)