Non-Coding RNA Search

Ss1.1-rret33_d3.5

Sequence:


               
               TAACCAAATATAGCTCTGTGTATAACATCATACAACAACCTTCAGAACTATCTTATGTTG
GGGAATTTATTTTTAAAATAATGGTTAGGTTTTAAATCAAAAATTTTATCAAAAGTTTCC
CATCTATTGTACTACATCATAAAGTGGCCTTCAAACTGAGTTAATAAGTGAAAGGTAGCT
TATGCTATGAGAGTTGCTTTTTCTCTTTTTCCTTTCTCTTTCTTTCCTCCCTCCTCCTCC
TTCTTTTTAATACCATAGGCCAGGCAACCTTGTCAAAGGAATGGGCGGACGAAATGAGAT
TTTCACCAGGACCTCAGGTTGGATAACATCTCAAAAATAGAAGAGCTTTACTAAAAGAAC
AGAAGTCAAGGGAGGACGAATAAAAACAGCAAAACCAAATAAAGTGGAGGTGAATAGTCG
AGTGAGGCAGACTGCTGTCCCATTAACATAGTGCTGAAACCAAAGGCGTTGGGGGTCTAA
ACTCAAGTTTCAGCAAATCACACCAGACATGAGGCCAGAGGGGACTTAAAGGAGATGAAC
GCTAAAGGCTTCTTGATCCATTGCTAACAGCCTGAGGCTCTTCAATGCCTTTCAGAAAAC
CGGTTTCTAGTAAAGCTTTGAATGCCTACACGTGCACGTGCGTAAATGCATGTGTACACA
CACGCACACACACGTATACACACACTTCGTCCTACACTATAAGCTGCTCCTTTGGTATGA
ATCTCTACTTATGGAAATGTAGAAACAAACATTTTAAAATAGCTGCTGTACTTTTCACAT
TTTGATCTATTAGGTACTAGCACTGAGAAAAATGTTCAGCACTTGGACTATCATAGGATG
AGTAAAATTTTCCTTGCACAAAGTGAATTAACTGATTTGTGAAGTTAAAAGGATGTACTC
ATTGTATTTACAAAGAATAAAAAAAATATATTGAATTTAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAACCAAATATAGCTCTGTGTATAACATCATACAACAACCTTCAGAACTATCTTATGTTG
GGGAATTTATTTTTAAAATAATGGTTAGGTTTTAAATCAAAAATTTTATCAAAAGTTTCC
CATCTATTGTACTACATCATAAAGTGGCCTTCAAACTGAGTTAATAAGTGAAAGGTAGCT
TATGCTATGAGAGTTGCTTTTTCTCTTTTTCCTTTCTCTTTCTTTCCTCCCTCCTCCTCC
TTCTTTTTAATACCATAGGCCAGGCAACCTTGTCAAAGGAATGGGCGGACGAAATGAGAT
TTTCACCAGGACCTCAGGTTGGATAACATCTCAAAAATAGAAGAGCTTTACTAAAAGAAC
AGAAGTCAAGGGAGGACGAATAAAAACAGCAAAACCAAATAAAGTGGAGGTGAATAGTCG
AGTGAGGCAGACTGCTGTCCCATTAACATAGTGCTGAAACCAAAGGCGTTGGGGGTCTAA
ACTCAAGTTTCAGCAAATCACACCAGACATGAGGCCAGAGGGGACTTAAAGGAGATGAAC
GCTAAAGGCTTCTTGATCCATTGCTAACAGCCTGAGGCTCTTCAATGCCTTTCAGAAAAC
CGGTTTCTAGTAAAGCTTTGAATGCCTACACGTGCACGTGCGTAAATGCATGTGTACACA
CACGCACACACACGTATACACACACTTCGTCCTACACTATAAGCTGCTCCTTTGGTATGA
ATCTCTACTTATGGAAATGTAGAAACAAACATTTTAAAATAGCTGCTGTACTTTTCACAT
TTTGATCTATTAGGTACTAGCACTGAGAAAAATGTTCAGCACTTGGACTATCATAGGATG
AGTAAAATTTTCCTTGCACAAAGTGAATTAACTGATTTGTGAAGTTAAAAGGATGTACTC
ATTGTATTTACAAAGAATAAAAAAAATATATTGAATTTAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               154-245, - strand, RNAz p=0.998813

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               154-245, - strand, RNAz p=0.998813

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-245, gnl|bosTau2|chr11 (85002042-85002290)
               

               
               1-245, gnl|canFam2|chr12 (68259298-68259850)
               

               
               1-245, gnl|echTel1|scaffold_223142 (1085-642)
               

               
               1-245, gnl|galGal2|chr3 (65890764-65890326)
               

               
               1-245, gnl|hg17|chr6 (108615514-108616018)
               

               
               1-245, gnl|Hg17|chr6 (108615739-108615966)
               

               
               1-245, gnl|loxAfr1|scaffold_37695 (5281-5779)
               

               
               1-245, gnl|mm7|chr10 (42373888-42373296)
               

               
               1-245, gnl|Mm7|chr10 (42373675-42373392)
               

               
               1-245, gnl|monDom2|scaffold_0 (112459811-112459345)
               

               
               1-245, gnl|oryCun1|scaffold_177067 (47196-47676)
               

               
               1-245, gnl|panTro1|chr5 (110916113-110916617)
               

               
               1-245, gnl|rheMac2|chr4 (155691428-155690921)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-245, gnl|bosTau2|chr11 (85002042-85002290)
               

               
               1-245, gnl|canFam2|chr12 (68259298-68259850)
               

               
               1-245, gnl|echTel1|scaffold_223142 (1085-642)
               

               
               1-245, gnl|galGal2|chr3 (65890764-65890326)
               

               
               1-245, gnl|hg17|chr6 (108615514-108616018)
               

               
               1-245, gnl|Hg17|chr6 (108615739-108615966)
               

               
               1-245, gnl|loxAfr1|scaffold_37695 (5281-5779)
               

               
               1-245, gnl|mm7|chr10 (42373888-42373296)
               

               
               1-245, gnl|Mm7|chr10 (42373675-42373392)
               

               
               1-245, gnl|monDom2|scaffold_0 (112459811-112459345)
               

               
               1-245, gnl|oryCun1|scaffold_177067 (47196-47676)
               

               
               1-245, gnl|panTro1|chr5 (110916113-110916617)
               

               
               1-245, gnl|rheMac2|chr4 (155691428-155690921)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fhi (0.169578)
               

               
               ret (0.128733)
               

               
               spc (0.113366)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)
               

               
               ret (0.128733)
               

               
               spc (0.113366)

	1-245, gnl\|bosTau2\|chr11 (85002042-85002290)
	1-245, gnl\|canFam2\|chr12 (68259298-68259850)
	1-245, gnl\|echTel1\|scaffold_223142 (1085-642)
	1-245, gnl\|galGal2\|chr3 (65890764-65890326)
	1-245, gnl\|hg17\|chr6 (108615514-108616018)
	1-245, gnl\|Hg17\|chr6 (108615739-108615966)
	1-245, gnl\|loxAfr1\|scaffold_37695 (5281-5779)
	1-245, gnl\|mm7\|chr10 (42373888-42373296)
	1-245, gnl\|Mm7\|chr10 (42373675-42373392)
	1-245, gnl\|monDom2\|scaffold_0 (112459811-112459345)
	1-245, gnl\|oryCun1\|scaffold_177067 (47196-47676)
	1-245, gnl\|panTro1\|chr5 (110916113-110916617)
	1-245, gnl\|rheMac2\|chr4 (155691428-155690921)