Non-Coding RNA Search

Ss1.1-rret33_f4.5

Sequence:


               
               CAGCTCACAGCAATGCCAGATCCTTAACCCACTGAGTGAGGCCAGGGATTGAACCCAGTG
TCCTCATGGATGCTAGCTGGGTTTGTAACCGGATGAGCTACAATGGGAACTCCAGTCATT
TTGCTTTTATGGTTTAAAAAAAAGGAAAAGAATCACTCCATCAAATGAATATTTATTGAG
AGGATTGTATTTGCACACAGAATGGCTCTTGGGGGAGCAGGTGATTAAAAACAAAAAGCT
GTATTGGACCATTTGTTTCCATCAGCAACAATGAACACAAAAGATCTGGCATTCCAATAG
GTCCTGTCCATTTTATACAAAATTATGGGAACATGGTCAACTGCTAAAGGGGACTTTGAA
GGTCAGTAAAGGAATGGTTTTTTGTTTTTTTGTTTCTTTGTTTTTTTTTTTCCCATCCAA
CTAAAAGCAGCACCTTCATTTCTCCCATGGAAAAAAGTAACCAAATGGGAATTTCCAGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCTCACAGCAATGCCAGATCCTTAACCCACTGAGTGAGGCCAGGGATTGAACCCAGTG
TCCTCATGGATGCTAGCTGGGTTTGTAACCGGATGAGCTACAATGGGAACTCCAGTCATT
TTGCTTTTATGGTTTAAAAAAAAGGAAAAGAATCACTCCATCAAATGAATATTTATTGAG
AGGATTGTATTTGCACACAGAATGGCTCTTGGGGGAGCAGGTGATTAAAAACAAAAAGCT
GTATTGGACCATTTGTTTCCATCAGCAACAATGAACACAAAAGATCTGGCATTCCAATAG
GTCCTGTCCATTTTATACAAAATTATGGGAACATGGTCAACTGCTAAAGGGGACTTTGAA
GGTCAGTAAAGGAATGGTTTTTTGTTTTTTTGTTTCTTTGTTTTTTTTTTTCCCATCCAA
CTAAAAGCAGCACCTTCATTTCTCCCATGGAAAAAAGTAACCAAATGGGAATTTCCAGGC

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               114-371, gnl|bosTau2|chr18 (22753226-22752969)
               

               
               114-371, gnl|canFam2|chr2 (61520233-61519925)
               

               
               114-371, gnl|dasNov1|scaffold_10706 (7198-7493)
               

               
               114-371, gnl|echTel1|scaffold_259917 (7258-7007)
               

               
               114-371, gnl|hg17|chr16 (56473885-56474221)
               

               
               114-371, gnl|Hg17|chr16 (56474243-56473954)
               

               
               114-371, gnl|oryCun1|scaffold_133963 (3819-4123)
               

               
               114-371, gnl|panTro1|chr18 (50588262-50588589)
               

               
               114-371, gnl|rheMac2|chr20 (56237524-56237857)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               114-371, gnl|bosTau2|chr18 (22753226-22752969)
               

               
               114-371, gnl|canFam2|chr2 (61520233-61519925)
               

               
               114-371, gnl|dasNov1|scaffold_10706 (7198-7493)
               

               
               114-371, gnl|echTel1|scaffold_259917 (7258-7007)
               

               
               114-371, gnl|hg17|chr16 (56473885-56474221)
               

               
               114-371, gnl|Hg17|chr16 (56474243-56473954)
               

               
               114-371, gnl|oryCun1|scaffold_133963 (3819-4123)
               

               
               114-371, gnl|panTro1|chr18 (50588262-50588589)
               

               
               114-371, gnl|rheMac2|chr20 (56237524-56237857)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ret (0.128733)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.128733)

	114-371, gnl\|bosTau2\|chr18 (22753226-22752969)
	114-371, gnl\|canFam2\|chr2 (61520233-61519925)
	114-371, gnl\|dasNov1\|scaffold_10706 (7198-7493)
	114-371, gnl\|echTel1\|scaffold_259917 (7258-7007)
	114-371, gnl\|hg17\|chr16 (56473885-56474221)
	114-371, gnl\|Hg17\|chr16 (56474243-56473954)
	114-371, gnl\|oryCun1\|scaffold_133963 (3819-4123)
	114-371, gnl\|panTro1\|chr18 (50588262-50588589)
	114-371, gnl\|rheMac2\|chr20 (56237524-56237857)