Ss1.1-rret33_n23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGAAGAAGCAGATTCCTTCTTTAAGGTGCTTTGCGGCAAGGATGAAGATACGATTCCTCA GCTCTTAGTAGACTTTTGGGAAGCTCTGCTGGTAGCGTGTCTCCCTGATGTGGTACTTCA GGAACTCTTCTTCAAGCTCACGTCACAGTACATCTGGAGATTATCTAAGAAGCAGCCTCC TGACACCATACCTTTGAGAACATCAGAGGACCTGATAAACACCTGTAGTCATTATGGCTT AATTAATCCATGGGTTAATGTCTTACTATCATCCGATTCTTTAGAGGATAAAAATTTCAT GGATGACCTTTCAAAATTACAGTCTCTTATATGTGGTCCTTCATTTGACATAGCTTCCAT TATTCCATTCTTGGAGCCACTCTCAGAAGACACTGTTGCTGGCCTCAGTGTCCATGTTCT GTGTTATACGCGTTTGAAAGAGTATGAACTGTGCATAGACAGGCTGTTAGAGAGATGCCC GGAGGCAGTCATCCCATATGCTAATCACGAACTGAAAGAAGAGAATCGGACTTTGTGGTG GAAAAAACTGCTACCTGAACTTTGTCAGAGAATAAAACGTGGTGGAGAGAAATATCAACT TTACCTGTCATCATTAAAAGAAACATTGTCAGTTGTTGCTGTGGAACTAGAACTAAGGGA TTTCTTAAATGTGCTCCCAGAAGATGGCACTGCAGCATTTTTCTTGCCATATCTTCTTTA CTGCAGTCGAAAGAAATCATTGACTTGAAGGTACCACTTGAAAAATACCACAATCACATA TGAGACTGAATTTTTAAAAACTGAATTCCAGATAAAAATATAAATAAAGGATTTTTATAT TGAATCTGTACATATATTGCAAATTCTTTTAGGCTGCTTACCTCAGTGGTATTTTTAGTT TCATAGTTTATGAACTGAATCCATTCACTTGTCTGGAATGTAAAAAAGCTACAAGACATA AGAATTTCCTCAAAGAAGGTATATATTTTTAAAGGTAGAGACTAATTTTATTCCAAGGAA CATCAATCCACTGTTGTTGGAGACATGACAATCTTTTTCATCCCAGGAACACAAAGAAAC AATTTGTGAGTATGCTCAAAAGAATGTCCCTCCAAGTGGTCCAGAATTTAACTTTTTAAT TTTTCCGGTTTTTTTCTATTGGTTCACTTTTAAAAACAATAATTTTCTTTGAGAAAAATG TTAATGTTTTCCCACAATAAAATATTTCAAATTTTATTTTCTTGTTACTTTCAAAACTCA TGCTGAATTTCTCTCTGAATCAAATCAAGTAGAAGTTTACAAAACTAACTTTCTTTGTAT CTGGCTATTAACATGATTTGTGGAATGCATGTTTTTCAGCCAAAGCCTTGTTTCCATCTT TTTGTTGATGTGTCCTCTTACTCTTTTAGCTAGACTATGTGAAAATAAAGAAATATGAAG AACTGTTCTTTTTTAGTCTCTTATTAAACAATTTTGAGTCCAAGTTTAGCTCATTGATAG TATGCTTTGACTTTAGTTAAGGTTGGGCAAAAATGCTACTCACCTGGTGTTTCCACAACC ATATTTTAAAAACTCCTCCTGATGACAATGTTCATCTTAACCAGAATCTAATTTATAGAA TTGTCAACTCTGCCTTTCTCCAGTGTAGAGTAACATCATTTTGATCATGTCTTCAAGGGT TCACAAAACTCAGATTGGCATCATTTTATTTTAAAATTTATTTTATGTAAATTCTTTTAA TTTAAATTTTTATTTTTGAAATTTTATTATTGTTTTATTTTATCTTAATATTTTATTTCC TGTATACTGTGTCCCAATGTCCACTGGTTCATCAGCAGTGATATGAGCAGCATGTTAGAG GGGTTGATGGGAAGCCAAAGTTTAGAAACATTTCATTGAAATCTTAATAGTGATCCTTTG AGGACTATCCAGGATAATGTCTGGTCATGGATTTTTTTTTTTTTTAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGAAGAAGCAGATTCCTTCTTTAAGGTGCTTTGCGGCAAGGATGAAGATACGATTCCTCA GCTCTTAGTAGACTTTTGGGAAGCTCTGCTGGTAGCGTGTCTCCCTGATGTGGTACTTCA GGAACTCTTCTTCAAGCTCACGTCACAGTACATCTGGAGATTATCTAAGAAGCAGCCTCC TGACACCATACCTTTGAGAACATCAGAGGACCTGATAAACACCTGTAGTCATTATGGCTT AATTAATCCATGGGTTAATGTCTTACTATCATCCGATTCTTTAGAGGATAAAAATTTCAT GGATGACCTTTCAAAATTACAGTCTCTTATATGTGGTCCTTCATTTGACATAGCTTCCAT TATTCCATTCTTGGAGCCACTCTCAGAAGACACTGTTGCTGGCCTCAGTGTCCATGTTCT GTGTTATACGCGTTTGAAAGAGTATGAACTGTGCATAGACAGGCTGTTAGAGAGATGCCC GGAGGCAGTCATCCCATATGCTAATCACGAACTGAAAGAAGAGAATCGGACTTTGTGGTG GAAAAAACTGCTACCTGAACTTTGTCAGAGAATAAAACGTGGTGGAGAGAAATATCAACT TTACCTGTCATCATTAAAAGAAACATTGTCAGTTGTTGCTGTGGAACTAGAACTAAGGGA TTTCTTAAATGTGCTCCCAGAAGATGGCACTGCAGCATTTTTCTTGCCATATCTTCTTTA CTGCAGTCGAAAGAAATCATTGACTTGAAGGTACCACTTGAAAAATACCACAATCACATA TGAGACTGAATTTTTAAAAACTGAATTCCAGATAAAAATATAAATAAAGGATTTTTATAT TGAATCTGTACATATATTGCAAATTCTTTTAGGCTGCTTACCTCAGTGGTATTTTTAGTT TCATAGTTTATGAACTGAATCCATTCACTTGTCTGGAATGTAAAAAAGCTACAAGACATA AGAATTTCCTCAAAGAAGGTATATATTTTTAAAGGTAGAGACTAATTTTATTCCAAGGAA CATCAATCCACTGTTGTTGGAGACATGACAATCTTTTTCATCCCAGGAACACAAAGAAAC AATTTGTGAGTATGCTCAAAAGAATGTCCCTCCAAGTGGTCCAGAATTTAACTTTTTAAT TTTTCCGGTTTTTTTCTATTGGTTCACTTTTAAAAACAATAATTTTCTTTGAGAAAAATG TTAATGTTTTCCCACAATAAAATATTTCAAATTTTATTTTCTTGTTACTTTCAAAACTCA TGCTGAATTTCTCTCTGAATCAAATCAAGTAGAAGTTTACAAAACTAACTTTCTTTGTAT CTGGCTATTAACATGATTTGTGGAATGCATGTTTTTCAGCCAAAGCCTTGTTTCCATCTT TTTGTTGATGTGTCCTCTTACTCTTTTAGCTAGACTATGTGAAAATAAAGAAATATGAAG AACTGTTCTTTTTTAGTCTCTTATTAAACAATTTTGAGTCCAAGTTTAGCTCATTGATAG TATGCTTTGACTTTAGTTAAGGTTGGGCAAAAATGCTACTCACCTGGTGTTTCCACAACC ATATTTTAAAAACTCCTCCTGATGACAATGTTCATCTTAACCAGAATCTAATTTATAGAA TTGTCAACTCTGCCTTTCTCCAGTGTAGAGTAACATCATTTTGATCATGTCTTCAAGGGT TCACAAAACTCAGATTGGCATCATTTTATTTTAAAATTTATTTTATGTAAATTCTTTTAA TTTAAATTTTTATTTTTGAAATTTTATTATTGTTTTATTTTATCTTAATATTTTATTTCC TGTATACTGTGTCCCAATGTCCACTGGTTCATCAGCAGTGATATGAGCAGCATGTTAGAG GGGTTGATGGGAAGCCAAAGTTTAGAAACATTTCATTGAAATCTTAATAGTGATCCTTTG AGGACTATCCAGGATAATGTCTGGTCATGGATTTTTTTTTTTTTTAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 99-218, - strand, RNAz p=0.956529 | |
| 101-218, - strand, RNAz p=0.742224 | |
| 1309-1423, - strand, RNAz p=0.79217 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 99-218, - strand, RNAz p=0.956529 | |
| 101-218, - strand, RNAz p=0.742224 | |
| 1309-1423, - strand, RNAz p=0.79217 |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 23-218, gnl|bosTau2|chr1 (76003996-76004191) | |
| 23-218, gnl|canFam2|chr23 (47022975-47023135) | |
| 23-218, gnl|danRer3|chr22 (48510423-48510260) | |
| 23-218, gnl|echTel1|scaffold_290256 (120727-120564) | |
| 23-218, gnl|galGal2|chr9 (23350661-23350496) | |
| 23-218, gnl|hg17|chr3 (150363158-150363318) | |
| 23-218, gnl|Hg17|chr3 (150363172-150363367) | |
| 23-218, gnl|loxAfr1|scaffold_6851 (55138-55299) | |
| 23-218, gnl|mm7|chr3 (19743038-19742865) | |
| 23-218, gnl|Mm7|chr3 (19743009-19742814) | |
| 23-218, gnl|monDom2|scaffold_28 (20767283-20767444) | |
| 23-218, gnl|oryCun1|scaffold_173242 (43746-43587) | |
| 23-218, gnl|panTro1|chr2 (153395922-153396082) | |
| 23-218, gnl|rheMac2|chr2 (138633393-138633233) | |
| 23-218, gnl|rn3|chr2 (105096111-105095938) | |
| 23-218, gnl|xenTro1|scaffold_275 (347581-347407) | |
| 321-529, gnl|bosTau2|chr1 (76009211-76009419) | |
| 321-529, gnl|canFam2|chr23 (47028163-47028366) | |
| 321-529, gnl|danRer3|chr22 (48508543-48508340) | |
| 321-529, gnl|dasNov1|scaffold_212553 (237-35) | |
| 321-529, gnl|echTel1|scaffold_290256 (116365-116162) | |
| 321-529, gnl|fr1|chrUn (292984507-292984712) | |
| 321-529, gnl|galGal2|chr9 (23349140-23348927) | |
| 321-529, gnl|hg17|chr3 (150367502-150367705) | |
| 321-529, gnl|Hg17|chr3 (150367517-150367725) | |
| 321-529, gnl|loxAfr1|scaffold_6851 (58953-59156) | |
| 321-529, gnl|mm7|chr3 (19735468-19735265) | |
| 321-529, gnl|Mm7|chr3 (19735451-19735243) | |
| 321-529, gnl|monDom2|scaffold_28 (20772497-20772700) | |
| 321-529, gnl|oryCun1|scaffold_173242 (38078-37875) | |
| 321-529, gnl|panTro1|chr2 (153400557-153400760) | |
| 321-529, gnl|rheMac2|chr2 (138629048-138628845) | |
| 321-529, gnl|tetNig1|chrUn_random (44572259-44572055) | |
| 321-529, gnl|xenTro1|scaffold_275 (346010-345808) | |
| 616-1780, gnl|bosTau2|chr1 (76014458-76015617) | |
| 616-1780, gnl|Hg17|chr3 (150372577-150373712) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 23-218, gnl|bosTau2|chr1 (76003996-76004191) | |
| 23-218, gnl|canFam2|chr23 (47022975-47023135) | |
| 23-218, gnl|danRer3|chr22 (48510423-48510260) | |
| 23-218, gnl|echTel1|scaffold_290256 (120727-120564) | |
| 23-218, gnl|galGal2|chr9 (23350661-23350496) | |
| 23-218, gnl|hg17|chr3 (150363158-150363318) | |
| 23-218, gnl|Hg17|chr3 (150363172-150363367) | |
| 23-218, gnl|loxAfr1|scaffold_6851 (55138-55299) | |
| 23-218, gnl|mm7|chr3 (19743038-19742865) | |
| 23-218, gnl|Mm7|chr3 (19743009-19742814) | |
| 23-218, gnl|monDom2|scaffold_28 (20767283-20767444) | |
| 23-218, gnl|oryCun1|scaffold_173242 (43746-43587) | |
| 23-218, gnl|panTro1|chr2 (153395922-153396082) | |
| 23-218, gnl|rheMac2|chr2 (138633393-138633233) | |
| 23-218, gnl|rn3|chr2 (105096111-105095938) | |
| 23-218, gnl|xenTro1|scaffold_275 (347581-347407) | |
| 321-529, gnl|bosTau2|chr1 (76009211-76009419) | |
| 321-529, gnl|canFam2|chr23 (47028163-47028366) | |
| 321-529, gnl|danRer3|chr22 (48508543-48508340) | |
| 321-529, gnl|dasNov1|scaffold_212553 (237-35) | |
| 321-529, gnl|echTel1|scaffold_290256 (116365-116162) | |
| 321-529, gnl|fr1|chrUn (292984507-292984712) | |
| 321-529, gnl|galGal2|chr9 (23349140-23348927) | |
| 321-529, gnl|hg17|chr3 (150367502-150367705) | |
| 321-529, gnl|Hg17|chr3 (150367517-150367725) | |
| 321-529, gnl|loxAfr1|scaffold_6851 (58953-59156) | |
| 321-529, gnl|mm7|chr3 (19735468-19735265) | |
| 321-529, gnl|Mm7|chr3 (19735451-19735243) | |
| 321-529, gnl|monDom2|scaffold_28 (20772497-20772700) | |
| 321-529, gnl|oryCun1|scaffold_173242 (38078-37875) | |
| 321-529, gnl|panTro1|chr2 (153400557-153400760) | |
| 321-529, gnl|rheMac2|chr2 (138629048-138628845) | |
| 321-529, gnl|tetNig1|chrUn_random (44572259-44572055) | |
| 321-529, gnl|xenTro1|scaffold_275 (346010-345808) | |
| 616-1780, gnl|bosTau2|chr1 (76014458-76015617) | |
| 616-1780, gnl|Hg17|chr3 (150372577-150373712) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| lun (1.20391) | |
| ret (0.514933) | |
| tra (0.369276) | |
| liv (0.292569) | |
| kid (0.259471) | |
| sug (0.254582) | |
| fbs (0.175346) | |
| fat (0.147427) | |
| lin (0.145603) | |
| pty (0.142714) | |
| thg (0.126791) | |
| spc (0.113366) | |
| cty (0.10408) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lun (1.20391) | |
| ret (0.514933) | |
| tra (0.369276) | |
| liv (0.292569) | |
| kid (0.259471) | |
| sug (0.254582) | |
| fbs (0.175346) | |
| fat (0.147427) | |
| lin (0.145603) | |
| pty (0.142714) | |
| thg (0.126791) | |
| spc (0.113366) | |
| cty (0.10408) |