Non-Coding RNA Search

Ss1.1-rret33_n4.5

Sequence:


               
               GCTGCGCGCTGGTGGGGCCGAAGCTGAGGGGAGGGGGTCGTGCGGGGGCGGGCGGAGCTG
CTGTGGCGGCGGCGGGAGACGGAGTGAGCCCGGTGGCTGCGGGCAGACCCGGAGGGAACG
GAGGTAGTGGTCATGTCTCGCTACACGAGGCCTCCCAACACGTCCCTGTTCGTCAGGAAC
GTCGCGGACGCCACCAGGCCTGAGGACTTGCGCCGTGAGTTTGGTCGATACGGCCCTATA
GTAGATGTTTACATTCCACTTGACTTCTACACCCGCCGCCCAAGAGGATTTGCTTATGTT
CAATTTGAAGATGTTCGTGATGCTGAAGATGCTCTATATAACCTCAATAGAAAGTGGGTA
TGTGGCCGTCAGATTGAAATACAGTTTGCACAAGGTGATCGCAAAACACCAGGCCAAATG
AAATCAAAAGAACGTCACCCTTGTTCTCCAAGCGATCATAGGAGGTCAAGAAGCCCTAGC
CAAAGGAGAACTCGAAGTAGAAGTTCTTCATGGGGAAGAAATAGGCGGCGGTCTGATAGC
CTTAAAGAGTCTCGACACAGGCGATGTTCTTACAGCCAGTCTAAGTCTCGTTCCAAATCA
CTCCCAAGGCGGTCTACCTCAGCAAGGCAGTCAAGAACTCCAAGAAGGAATTCTGGCTCT
AGAGGACGGTCAAGGTCCAAGTCCTTACAAAAAAGGTCCAAGTCTATAGGAAAATCACAG
TCCAGCTCACCTCAAAAGCAGACAAGCTCAGGAACAAAATCAAGATCACATGGAAGACAT
TCTGACTCCATAGCAAGATCCCCATGTAAATCTCCCAAAGGCTATACCAATTCTGAAACT
AAAGCACAAACGGCAAAACACTCTCACTTTCGATCACATTCCAGATCTCGGAGTTATCGT
CATAAAAACAGTTGGTGAACAGCAACAGAACAGTGCTACGTAGTCTTTCATATAAGTTAT
TAAACCTCTCATTATGTTAAATAAAAATTCTTTAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGCGCGCTGGTGGGGCCGAAGCTGAGGGGAGGGGGTCGTGCGGGGGCGGGCGGAGCTG
CTGTGGCGGCGGCGGGAGACGGAGTGAGCCCGGTGGCTGCGGGCAGACCCGGAGGGAACG
GAGGTAGTGGTCATGTCTCGCTACACGAGGCCTCCCAACACGTCCCTGTTCGTCAGGAAC
GTCGCGGACGCCACCAGGCCTGAGGACTTGCGCCGTGAGTTTGGTCGATACGGCCCTATA
GTAGATGTTTACATTCCACTTGACTTCTACACCCGCCGCCCAAGAGGATTTGCTTATGTT
CAATTTGAAGATGTTCGTGATGCTGAAGATGCTCTATATAACCTCAATAGAAAGTGGGTA
TGTGGCCGTCAGATTGAAATACAGTTTGCACAAGGTGATCGCAAAACACCAGGCCAAATG
AAATCAAAAGAACGTCACCCTTGTTCTCCAAGCGATCATAGGAGGTCAAGAAGCCCTAGC
CAAAGGAGAACTCGAAGTAGAAGTTCTTCATGGGGAAGAAATAGGCGGCGGTCTGATAGC
CTTAAAGAGTCTCGACACAGGCGATGTTCTTACAGCCAGTCTAAGTCTCGTTCCAAATCA
CTCCCAAGGCGGTCTACCTCAGCAAGGCAGTCAAGAACTCCAAGAAGGAATTCTGGCTCT
AGAGGACGGTCAAGGTCCAAGTCCTTACAAAAAAGGTCCAAGTCTATAGGAAAATCACAG
TCCAGCTCACCTCAAAAGCAGACAAGCTCAGGAACAAAATCAAGATCACATGGAAGACAT
TCTGACTCCATAGCAAGATCCCCATGTAAATCTCCCAAAGGCTATACCAATTCTGAAACT
AAAGCACAAACGGCAAAACACTCTCACTTTCGATCACATTCCAGATCTCGGAGTTATCGT
CATAAAAACAGTTGGTGAACAGCAACAGAACAGTGCTACGTAGTCTTTCATATAAGTTAT
TAAACCTCTCATTATGTTAAATAAAAATTCTTTAAG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               SRR35_HUMAN

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               SRR35_HUMAN

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               1-197, gnl|bosTau2|chr11 (30863967-30863762)
               

               
               1-197, gnl|Hg17|chr6 (89884467-89884264)
               


               
               303-996, gnl|bosTau2|chr11 (30863394-30862698)
               

               
               303-996, gnl|Hg17|chr6 (89871968-89864938)
               

               
               303-996, gnl|Mm7|chr4 (33504170-33509771)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-197, gnl|bosTau2|chr11 (30863967-30863762)
               

               
               1-197, gnl|Hg17|chr6 (89884467-89884264)
               


               
               303-996, gnl|bosTau2|chr11 (30863394-30862698)
               

               
               303-996, gnl|Hg17|chr6 (89871968-89864938)
               

               
               303-996, gnl|Mm7|chr4 (33504170-33509771)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               ret (0.128733)
               

               
               eep (0.122564)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.128733)
               

               
               eep (0.122564)

	1-197, gnl\|bosTau2\|chr11 (30863967-30863762)
	1-197, gnl\|Hg17\|chr6 (89884467-89884264)

	303-996, gnl\|bosTau2\|chr11 (30863394-30862698)
	303-996, gnl\|Hg17\|chr6 (89871968-89864938)
	303-996, gnl\|Mm7\|chr4 (33504170-33509771)