Non-Coding RNA Search

Ss1.1-rret33_p9.5

Sequence:


               
               TAAAGATAAGGCATCTTTGGAATTACCACGTAGATCATCAAGCAAATTTAATTTACAGAA
ATATAATTCAGGATCCATCTATCGTGTTAAGTAAAAGCAAGCTAAGTATATGGCACTTAC
ATGATCTATTGTAAGTGACAGTCTCAGTGGTTCCTCGTGTGTGTCTGTGACTTTCGTGAA
AGGGAGAAATTATGTTGCATCAAAGTGTCTTGCATTATGCATTTTTATATTAAGCAAATG
TTTATTCTTTGGTATCATCCAAGTTAAATTTAGAGTTTTTAAACATCAACCTTTAAACCA
ATTGCTGCTACTTATATAATTGCCAAAAAGTGAAATAATTAGTAGTTCATGTAAATAATA
CACGATTTTTCTATTTTATTATGAAGGTGAATAGCCATATTTGTAAAGTGACAATCATCT
GTGTTAACCCAGTACTTTCCGTTCATGAAGACACATCTGCTTTTTGTGATATGCACAGTG
TAGATAAGTGTTCTGACCTTCTTTTTTGATATAGAATTATAAAGAAGTGTGGTTTATATA
TTTAAAAATGTCAATCTAAGTATTAAAATGTTTGCATGTTGTCTAAGTAATTAAATACTT
TGAATGTGTTTCACAGTTTGAAATAAGCTATTCAGTGTAATACTTCTTGTTTATATGCAC
CTAAACTTAGATTTTACATGAAGTGTTTTTTTCAGTGTTATATGTACCCTCTGAAATATA
TAGGCATATGCTTATTATACCAAAATGTTGTTTTAAAGTGGGCACTTAAAGCTCTCAGAA
TATCTCAGTGCTGATGTAGCATGTTTGTTGCAATTGCTTTTTCTATAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAAGATAAGGCATCTTTGGAATTACCACGTAGATCATCAAGCAAATTTAATTTACAGAA
ATATAATTCAGGATCCATCTATCGTGTTAAGTAAAAGCAAGCTAAGTATATGGCACTTAC
ATGATCTATTGTAAGTGACAGTCTCAGTGGTTCCTCGTGTGTGTCTGTGACTTTCGTGAA
AGGGAGAAATTATGTTGCATCAAAGTGTCTTGCATTATGCATTTTTATATTAAGCAAATG
TTTATTCTTTGGTATCATCCAAGTTAAATTTAGAGTTTTTAAACATCAACCTTTAAACCA
ATTGCTGCTACTTATATAATTGCCAAAAAGTGAAATAATTAGTAGTTCATGTAAATAATA
CACGATTTTTCTATTTTATTATGAAGGTGAATAGCCATATTTGTAAAGTGACAATCATCT
GTGTTAACCCAGTACTTTCCGTTCATGAAGACACATCTGCTTTTTGTGATATGCACAGTG
TAGATAAGTGTTCTGACCTTCTTTTTTGATATAGAATTATAAAGAAGTGTGGTTTATATA
TTTAAAAATGTCAATCTAAGTATTAAAATGTTTGCATGTTGTCTAAGTAATTAAATACTT
TGAATGTGTTTCACAGTTTGAAATAAGCTATTCAGTGTAATACTTCTTGTTTATATGCAC
CTAAACTTAGATTTTACATGAAGTGTTTTTTTCAGTGTTATATGTACCCTCTGAAATATA
TAGGCATATGCTTATTATACCAAAATGTTGTTTTAAAGTGGGCACTTAAAGCTCTCAGAA
TATCTCAGTGCTGATGTAGCATGTTTGTTGCAATTGCTTTTTCTATAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               2-818, gnl|bosTau2|chr8 (31878324-31877495)
               

               
               2-818, gnl|Hg17|chr9 (36113535-36114384)
               

               
               2-818, gnl|Mm7|chr4 (43957637-43958422)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-818, gnl|bosTau2|chr8 (31878324-31877495)
               

               
               2-818, gnl|Hg17|chr9 (36113535-36114384)
               

               
               2-818, gnl|Mm7|chr4 (43957637-43958422)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

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               pro (0.512033)
               

               
               amn (0.417711)
               

               
               liv (0.292569)
               

               
               ret (0.257467)
               

               
               mgp (0.230681)
               

               
               fli (0.202881)
               

               
               aor (0.195274)
               

               
               fco (0.157208)
               

               
               lin (0.145603)
               

               
               eru (0.120048)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               amn (0.417711)
               

               
               liv (0.292569)
               

               
               ret (0.257467)
               

               
               mgp (0.230681)
               

               
               fli (0.202881)
               

               
               aor (0.195274)
               

               
               fco (0.157208)
               

               
               lin (0.145603)
               

               
               eru (0.120048)

	2-818, gnl\|bosTau2\|chr8 (31878324-31877495)
	2-818, gnl\|Hg17\|chr9 (36113535-36114384)
	2-818, gnl\|Mm7\|chr4 (43957637-43958422)

	pro (0.512033)
	amn (0.417711)
	liv (0.292569)
	ret (0.257467)
	mgp (0.230681)
	fli (0.202881)
	aor (0.195274)
	fco (0.157208)
	lin (0.145603)
	eru (0.120048)