Non-Coding RNA Search

Ss1.1-rret34_c10.5

Sequence:


               
               GGAGCATTATTTGCTTATTTAAATGGTATTGAGAACACTGCATGTGGTGTTTATAAATAC
TTTTCTCATCCAACTACACATTGATGGTCCTGCTGTATTTTCCTCTTGAGTCTTCCTATA
TGTGTTTAGGATTCTATTTCCATGATAGGGTATGGACACATAAGCATATGACAGGTGGCT
GTTTAGGAGAGAAGAGATTTGTGTGCACACGTGTATCTGTTATGAAATAATTAAAGAATC
TATTAATTTATTCTCATCCTTACTAAGGGCATAAACCACACCCACCTGTCAAACTCATTG
TTATTTGTTCATTGTAGTAGAAATATTGCATATTAATTCCATTGAGTCTCCTCATGTTTC
AGGCTCTGTAGTAAACCTTTGTGTGCATAAAGAGCATGACAGGCACAATTTCTATCCTAA
TGAGGTCATGAGGTCTTTCATCTAAGAATTTGTGTTTAAAAAGATGAGGTCTTTCATCTA
AGAATTTGTGTTTAAAAAGGAATATTATTCAGCCATAAAAAGAATTTGTGTTTAAAAAGA
TGAGGTCTTTCAGCTAAGAATTTGTGTTTAAAAAGGAATATTATTCAGCCATAAAAAGAA
TGAAATAAGGCCATTTGCAGCATCATGGATGGACCTAGAGATTTATCATACTAAGTAAGT
CAGACAGAGAAAGATAAAGATCATATGATATCACTTACATGTGGAATC------------
------------ATTTATGAAACAGCAGCAGACTCACAGACATAGCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGCATTATTTGCTTATTTAAATGGTATTGAGAACACTGCATGTGGTGTTTATAAATAC
TTTTCTCATCCAACTACACATTGATGGTCCTGCTGTATTTTCCTCTTGAGTCTTCCTATA
TGTGTTTAGGATTCTATTTCCATGATAGGGTATGGACACATAAGCATATGACAGGTGGCT
GTTTAGGAGAGAAGAGATTTGTGTGCACACGTGTATCTGTTATGAAATAATTAAAGAATC
TATTAATTTATTCTCATCCTTACTAAGGGCATAAACCACACCCACCTGTCAAACTCATTG
TTATTTGTTCATTGTAGTAGAAATATTGCATATTAATTCCATTGAGTCTCCTCATGTTTC
AGGCTCTGTAGTAAACCTTTGTGTGCATAAAGAGCATGACAGGCACAATTTCTATCCTAA
TGAGGTCATGAGGTCTTTCATCTAAGAATTTGTGTTTAAAAAGATGAGGTCTTTCATCTA
AGAATTTGTGTTTAAAAAGGAATATTATTCAGCCATAAAAAGAATTTGTGTTTAAAAAGA
TGAGGTCTTTCAGCTAAGAATTTGTGTTTAAAAAGGAATATTATTCAGCCATAAAAAGAA
TGAAATAAGGCCATTTGCAGCATCATGGATGGACCTAGAGATTTATCATACTAAGTAAGT
CAGACAGAGAAAGATAAAGATCATATGATATCACTTACATGTGGAATC------------
------------ATTTATGAAACAGCAGCAGACTCACAGACATAGCAA

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

Help | Less info


               
               2-464, gnl|bosTau2|chr11 (53719192-53719652)
               

               
               2-464, gnl|canFam2|chr33 (10389872-10390202)
               

               
               2-464, gnl|dasNov1|scaffold_1978 (24960-24671)
               

               
               2-464, gnl|echTel1|scaffold_309073 (49906-50224)
               

               
               2-464, gnl|hg17|chr3 (102056948-102057250)
               

               
               2-464, gnl|Hg17|chr3 (102057407-102056946)
               

               
               2-464, gnl|loxAfr1|scaffold_12216 (54551-54831)
               

               
               2-464, gnl|mm7|chr16 (56450898-56450634)
               

               
               2-464, gnl|Mm7|chr16 (56450492-56450900)
               

               
               2-464, gnl|monDom2|scaffold_50 (9599861-9599599)
               

               
               2-464, gnl|oryCun1|scaffold_163021 (31101-31371)
               

               
               2-464, gnl|panTro1|chr2 (103302715-103303017)
               

               
               2-464, gnl|rheMac2|chr2 (21037418-21037716)
               

               
               2-464, gnl|rn3|chr11 (44997687-44997955)
               


               
               569-708, gnl|bosTau2|chr11 (81174612-81174752)

Aligned organism(s): 15 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-464, gnl|bosTau2|chr11 (53719192-53719652)
               

               
               2-464, gnl|canFam2|chr33 (10389872-10390202)
               

               
               2-464, gnl|dasNov1|scaffold_1978 (24960-24671)
               

               
               2-464, gnl|echTel1|scaffold_309073 (49906-50224)
               

               
               2-464, gnl|hg17|chr3 (102056948-102057250)
               

               
               2-464, gnl|Hg17|chr3 (102057407-102056946)
               

               
               2-464, gnl|loxAfr1|scaffold_12216 (54551-54831)
               

               
               2-464, gnl|mm7|chr16 (56450898-56450634)
               

               
               2-464, gnl|Mm7|chr16 (56450492-56450900)
               

               
               2-464, gnl|monDom2|scaffold_50 (9599861-9599599)
               

               
               2-464, gnl|oryCun1|scaffold_163021 (31101-31371)
               

               
               2-464, gnl|panTro1|chr2 (103302715-103303017)
               

               
               2-464, gnl|rheMac2|chr2 (21037418-21037716)
               

               
               2-464, gnl|rn3|chr11 (44997687-44997955)
               


               
               569-708, gnl|bosTau2|chr11 (81174612-81174752)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ret (0.3862)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.3862)

	2-464, gnl\|bosTau2\|chr11 (53719192-53719652)
	2-464, gnl\|canFam2\|chr33 (10389872-10390202)
	2-464, gnl\|dasNov1\|scaffold_1978 (24960-24671)
	2-464, gnl\|echTel1\|scaffold_309073 (49906-50224)
	2-464, gnl\|hg17\|chr3 (102056948-102057250)
	2-464, gnl\|Hg17\|chr3 (102057407-102056946)
	2-464, gnl\|loxAfr1\|scaffold_12216 (54551-54831)
	2-464, gnl\|mm7\|chr16 (56450898-56450634)
	2-464, gnl\|Mm7\|chr16 (56450492-56450900)
	2-464, gnl\|monDom2\|scaffold_50 (9599861-9599599)
	2-464, gnl\|oryCun1\|scaffold_163021 (31101-31371)
	2-464, gnl\|panTro1\|chr2 (103302715-103303017)
	2-464, gnl\|rheMac2\|chr2 (21037418-21037716)
	2-464, gnl\|rn3\|chr11 (44997687-44997955)

	569-708, gnl\|bosTau2\|chr11 (81174612-81174752)