Non-Coding RNA Search

Ss1.1-rret34_c19.5

Sequence:


               
               CATTTGTGACTAGAAGTGTTTTTCTAGAATTATGGCAGTACTTTTGTCTTTTGCCTTCAT
TTATGGCTAATATTATGTTTACTAGAGGAAATTCTGAATCATTCTTGACTAATTTCAAAA
TTCAGTGCTCTGCTGTGTAGCTCTCTCATAATCCTCAAGCCTCAAGTGCCTATAGAGGAA
ACGTAACTCTGTTAATATTTATTTTGTGAGAAGTGACTTCTTTTTATTTGGGTTATATAT
GAGCATTTTATGTATTAGAGGCAAATTATTGCTAAAACTTGAGGAAACTATTATGAAGAA
GAATGATTTGGAAGAACCAGAGTTTATTTAAATATTAATTTTATGAGAACATTAGAGTAA
TTTATATAGAGTTTCAAAGAAAATTATAGTAGGACAGCTAAGAAATTATTATCAAAACTG
ATTATTCCTTAGAGCATTTCCATTCTCCTTTTATATTTTATAATACTGCTTTTGAATATG
TGATTTGGCAAAGGGCTTGATGAAATTAAGTACTAAGATTTAGTTCTGCTTTAGTATAGA
ATTTGTCAGGAAGATTGTCGTATTACAGAGTGTATTTTATTAAGTTGTACGGTTACAAAA
CTTTTTTTTAATTTTCAGGTAATATCTTTTAAAAGGTCTTGATTTAATGTTTTTCTTCGG
AAAGAATTACAAAATAAAGTGCCATAAGCTAATTAAAAAATAAAAGGGCAAGCATGTTCG
AAAACAGAAGCCAGTAAACCGGGGTATATTGGCATTGTTTGTTCTGTATGGCATAATGGG
GTGTGATATACTTTATATATGCTATCACTGCTTAATTTTCTAAAACATTCTGCTGTTTTT
ATGGGAATATTTATTTATTCATTAAAAATTCTTTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATTTGTGACTAGAAGTGTTTTTCTAGAATTATGGCAGTACTTTTGTCTTTTGCCTTCAT
TTATGGCTAATATTATGTTTACTAGAGGAAATTCTGAATCATTCTTGACTAATTTCAAAA
TTCAGTGCTCTGCTGTGTAGCTCTCTCATAATCCTCAAGCCTCAAGTGCCTATAGAGGAA
ACGTAACTCTGTTAATATTTATTTTGTGAGAAGTGACTTCTTTTTATTTGGGTTATATAT
GAGCATTTTATGTATTAGAGGCAAATTATTGCTAAAACTTGAGGAAACTATTATGAAGAA
GAATGATTTGGAAGAACCAGAGTTTATTTAAATATTAATTTTATGAGAACATTAGAGTAA
TTTATATAGAGTTTCAAAGAAAATTATAGTAGGACAGCTAAGAAATTATTATCAAAACTG
ATTATTCCTTAGAGCATTTCCATTCTCCTTTTATATTTTATAATACTGCTTTTGAATATG
TGATTTGGCAAAGGGCTTGATGAAATTAAGTACTAAGATTTAGTTCTGCTTTAGTATAGA
ATTTGTCAGGAAGATTGTCGTATTACAGAGTGTATTTTATTAAGTTGTACGGTTACAAAA
CTTTTTTTTAATTTTCAGGTAATATCTTTTAAAAGGTCTTGATTTAATGTTTTTCTTCGG
AAAGAATTACAAAATAAAGTGCCATAAGCTAATTAAAAAATAAAAGGGCAAGCATGTTCG
AAAACAGAAGCCAGTAAACCGGGGTATATTGGCATTGTTTGTTCTGTATGGCATAATGGG
GTGTGATATACTTTATATATGCTATCACTGCTTAATTTTCTAAAACATTCTGCTGTTTTT
ATGGGAATATTTATTTATTCATTAAAAATTCTTTTA

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               2-520, gnl|bosTau2|chr1 (43414269-43414775)
               

               
               2-520, gnl|Hg17|chr3 (197949131-197950019)
               


               
               561-856, gnl|bosTau2|chr1 (43414772-43415091)
               

               
               561-856, gnl|Hg17|chr3 (197950012-197950673)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-520, gnl|bosTau2|chr1 (43414269-43414775)
               

               
               2-520, gnl|Hg17|chr3 (197949131-197950019)
               


               
               561-856, gnl|bosTau2|chr1 (43414772-43415091)
               

               
               561-856, gnl|Hg17|chr3 (197950012-197950673)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               mgp (0.230681)
               

               
               ret (0.128733)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.230681)
               

               
               ret (0.128733)

	2-520, gnl\|bosTau2\|chr1 (43414269-43414775)
	2-520, gnl\|Hg17\|chr3 (197949131-197950019)

	561-856, gnl\|bosTau2\|chr1 (43414772-43415091)
	561-856, gnl\|Hg17\|chr3 (197950012-197950673)