Non-Coding RNA Search

Ss1.1-rret34_d7.5

Sequence:


               
               AAAGAGTTAGAAAATGTCATGTCACATTTTCAATTATAAGAAATAGAGATTCTTTTCTAA
AAGTGTATATTATAATTAACACTATATAGTTAACCAGAGTTCAAAACAAGTGGAAATGTT
TCTTTTAATTTAACTCATTATGTGCCTTCTTTGGTCATTAAAAAACATAATTACATATAT
TTTAAATATAAGTTATTTCTTTCTGAAACGCTAATCTTCAGCCCTTAGCAAAAAAAAAAA
AGAAAAAGAAAAAAGAAAATGACAGAGGCACCGTCTTGCACTACTTACTATCAGTAAGTT
TTAAATTAGTTGTTTTTTAAACATTTTTAAAGCTTGCAATTAAATAAATCTGAAACAAAC
ATTTAAACTAGCCAAGACACTAATTTTTATGTGTAATCACAATATTTTATACCTATCTTT
ATTGAATAAAAATAATTATGCTACAGGTAAGTCCTACACCAGAAGAATTCTTTCCTCTTG
CAGTGTTTTGGGACTTGAAAATAATGGTTTACTTAAAGAACCAATTATTTTCTCTACTGA
GGAACCCAATGTAGATCTTGCACTGATGTTTTTATTACTGCCTTTTTAAGAATCTCTAGA
TATCTAGATGTTAAGGCATGTATGATCTTTGATAAAGTATTCTTTTATATTTTCAAATTA
ATGTTGTATAAATGTTTTAATATCTTGCCTTAAATTAGTTCACTGTTCTTTCTGGGATTC
AAGCATTGTGGCATTTAAAAGAGGAAACGTTCAATTTGATACTTATACTTCAGATCAAAA
AGGAATGAAGCCCCATTACCATAATCCATGGATTTACTTACATGCTCTTTGACTAGCAGT
GCAGATATGAATGAATATGACAGTTAGTCTTATCTATAAGAACCAAATACTTTAATTATA
TTAAGGTAGTGAGTAAAGATGTATAATATTTTTATTAATATCTTGAATATATTCAGTGGA
TTGAATGTGATTTCATAACTGTACTACAATTGTATTAAAATATTTCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAGAGTTAGAAAATGTCATGTCACATTTTCAATTATAAGAAATAGAGATTCTTTTCTAA
AAGTGTATATTATAATTAACACTATATAGTTAACCAGAGTTCAAAACAAGTGGAAATGTT
TCTTTTAATTTAACTCATTATGTGCCTTCTTTGGTCATTAAAAAACATAATTACATATAT
TTTAAATATAAGTTATTTCTTTCTGAAACGCTAATCTTCAGCCCTTAGCAAAAAAAAAAA
AGAAAAAGAAAAAAGAAAATGACAGAGGCACCGTCTTGCACTACTTACTATCAGTAAGTT
TTAAATTAGTTGTTTTTTAAACATTTTTAAAGCTTGCAATTAAATAAATCTGAAACAAAC
ATTTAAACTAGCCAAGACACTAATTTTTATGTGTAATCACAATATTTTATACCTATCTTT
ATTGAATAAAAATAATTATGCTACAGGTAAGTCCTACACCAGAAGAATTCTTTCCTCTTG
CAGTGTTTTGGGACTTGAAAATAATGGTTTACTTAAAGAACCAATTATTTTCTCTACTGA
GGAACCCAATGTAGATCTTGCACTGATGTTTTTATTACTGCCTTTTTAAGAATCTCTAGA
TATCTAGATGTTAAGGCATGTATGATCTTTGATAAAGTATTCTTTTATATTTTCAAATTA
ATGTTGTATAAATGTTTTAATATCTTGCCTTAAATTAGTTCACTGTTCTTTCTGGGATTC
AAGCATTGTGGCATTTAAAAGAGGAAACGTTCAATTTGATACTTATACTTCAGATCAAAA
AGGAATGAAGCCCCATTACCATAATCCATGGATTTACTTACATGCTCTTTGACTAGCAGT
GCAGATATGAATGAATATGACAGTTAGTCTTATCTATAAGAACCAAATACTTTAATTATA
TTAAGGTAGTGAGTAAAGATGTATAATATTTTTATTAATATCTTGAATATATTCAGTGGA
TTGAATGTGATTTCATAACTGTACTACAATTGTATTAAAATATTTCTT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               3-451, gnl|bosTau2|chr15 (23234310-23234746)
               

               
               3-451, gnl|Hg17|chr11 (17065665-17065256)
               

               
               3-451, gnl|Mm7|chr7 (112254426-112254016)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-451, gnl|bosTau2|chr15 (23234310-23234746)
               

               
               3-451, gnl|Hg17|chr11 (17065665-17065256)
               

               
               3-451, gnl|Mm7|chr7 (112254426-112254016)

Expressed library(ies): 13 entry(ies)

More info

Expressed library(ies): 13 entry(ies)

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               ret (0.7724)
               

               
               sag (0.548145)
               

               
               pro (0.512033)
               

               
               fco (0.471624)
               

               
               bfe (0.299715)
               

               
               mgp (0.230681)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               fty (0.17584)
               

               
               mga (0.160205)
               

               
               lin (0.145603)
               

               
               nmm (0.132802)
               

               
               ecc (0.115035)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.7724)
               

               
               sag (0.548145)
               

               
               pro (0.512033)
               

               
               fco (0.471624)
               

               
               bfe (0.299715)
               

               
               mgp (0.230681)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               fty (0.17584)
               

               
               mga (0.160205)
               

               
               lin (0.145603)
               

               
               nmm (0.132802)
               

               
               ecc (0.115035)

	3-451, gnl\|bosTau2\|chr15 (23234310-23234746)
	3-451, gnl\|Hg17\|chr11 (17065665-17065256)
	3-451, gnl\|Mm7\|chr7 (112254426-112254016)

	ret (0.7724)
	sag (0.548145)
	pro (0.512033)
	fco (0.471624)
	bfe (0.299715)
	mgp (0.230681)
	ece (0.229305)
	fcc (0.197785)
	fty (0.17584)
	mga (0.160205)
	lin (0.145603)
	nmm (0.132802)
	ecc (0.115035)