Non-Coding RNA Search

Ss1.1-rret34_e21.5

Sequence:


               
               GATGGCCGACTTCGAGGATCGGGTGTCGGATGAGGAGAAGGTACGCATAGCTGCTAAATT
CATCACTCATGCACCGCCAGGGGAATTTAATGAAGTGTTCAATGATGTCCGGCTACTACT
TAATAATGACAATCTCCTCAGGGAAGGGGCAGCACATGCATTTGCCCAGTATAACATGGA
TCAGTTCACACCTGTGAAGATAGAAGGATATGAAGATCAGGTCTTAATTACAGAACACGG
TGACCTGGGTAATAGCAGATTTTTAGATCCAAGAAATAAAATTTCCTTTAAGTTTGATCA
CTTACGGAAAGAAGCAAGTGACCCGCAGCCAGAGGAAGTAGATGGAAGTCTGAAGTCTTG
GAGAGAATCCTGTGACAGCGCTCTAAGGGCCTATGTGAAAGATCATTATTCCAACGGCTT
CTGTACTGTTTATGCTAAAAATATTGATGGGCAGCAGACCATTATTGCATGTATTGAAAG
CCACCAATTTCAGCCTAAAAACTTCTGGAATGGTCGTTGGAGATCGGAGTGGAAGTTCAC
CATCACACCACCTACAGCCCAGGTGGTTGGAGTACTTAAAATTCAGGTTCACTATTATGA
AGATGGCAATGTTCAGTTGGTTAGTCATAAAGACGTACAGGATTCAGTAACTGTTTCGAA
TGAAGCCCAAACTGCCAAGGAGTTTATTAAAATCATAGAGCATGCAGAAAATGAGTATCA
GACAGCAATTAGTGAAAACTATCAAACAATGTCAGACACCACATTCAAGGCCTTGCGCCG
GCAACTTCCAGTGACCCGCACCAAAATCGACTGGAACAAGATACTCAGCTACAAGATTGG
CAAAGAAATGCAAAATGCTTAAAGGATGAACGTAGGATTCTTCAATACATGGAAAGAAAG
GATTCAGCGTGTGGTCTTATGATAAATAAGTGATTTATAAACAAGAGTGATATTTTGCTA
GGGCTTTCAAAGTTAACAGGTTTTCTAGCCTCACGGAATACTGTTGAACATATAGCATTG
TCTTGATTCTTTTGTGTTTTCCGCCTTGTGATTTTCTTTTTTCACTATATCTACTTGTAA
ATCCTTTGTTTGTTTTTCTAATTTCTTTTTAAATTCTGCCACATTTAATGATGGGGAGAG
AGATCTATCCTGGGGTCATTTTACTGTTTTGAAAATTTTCCTAGCCATGAAGCCCTGTTA
CTGATATAGACAGGTAATATGTTCAGTACTTTTCTATCCCATCCTTCAAAACACTTCTGG
TACTTCAGTGGTTTTTACTGATCGACCAATAGCTAAAGAGGCTATGCTGCAAACTGTAAC
TGAATGGAAGACACATTCATCCTTCTCCCTCCAATTGCTTTGATCATCATTTTTAACATC
TCATAACTAGTTTTCAAACATTTGGATTGGGGTTTTTCGGGTCCATTTTGGAGGCAAAGG
ACGTTTTCTGGAAATTCCATTATAGCCAGCTTCTCTGAGGAAGTTGTTTTTAAATCCAAA
GACTTGAACCACATTCCTTGCATATGTACGTGTTTGCTTTCTTTCCCTTCCCTTATTGTC
TCCCTCCCATTTAGTACCATTATAGTTATAGACGTGCATTTTTTAGAAGAGTTCTACTCA
TTTGTTATTATTTTTTTAATATTCAAAAACTGCTGACATACTAGGGATATAGTAGAGTAT
AAAACTTGAAGAAATGCAGATATTGAAGGAATTACAGGTATCTTGTGCTTTAATACTTTG
TGGCAGGATTGTACTATAAGCAAATGAATCAAACAGCTGTGTGAATCACAAACAAAAACT
AAAAATGAACCAAAGTGAAACGGATAACTTTCAGGCAGTATCTTTCTATTGTAACCTGTT
ATTTAAGGGAATACTAGTGAATTGTTCTAAATAGGATGTAAAACTTGTTCCAAATTACTC
TTCCTCAGTCTGCCTGCCAACTCAAGTGTAACTGTGATATAGTAACCCTTTCCAGCTTTA
CTGGCAGGTGTAGGTGTGATCTCAGAATACACAGGTGACATAGATATGATATGACAACTG
GTAATGGTGGATTCATTTACATTGTTTACACTTCTATGACCAGGCCTTAAGGGAAGGTCA
GTTTTTTAAAAACCAAGTAGTGTCTTCCTCCAAATACATGTCAAAAAAGAAGGGTGTTTG
TGCTTCAGCTTTGTTTTTGCTCAGTAATACAGTCAAGCAAGAGTTTGTTTCCAAGTGACC
TGTTGAGCTGTGTAAGCATTTTTGTTTATTTCAAATAAAATATATTTGTATTATTTGTCA
TTCATACTATCCATCCATACCACACTATCCTCTGTATCAGGTAGTCCAATAGAAATATAC
CTGTTTTGTTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATGGCCGACTTCGAGGATCGGGTGTCGGATGAGGAGAAGGTACGCATAGCTGCTAAATT
CATCACTCATGCACCGCCAGGGGAATTTAATGAAGTGTTCAATGATGTCCGGCTACTACT
TAATAATGACAATCTCCTCAGGGAAGGGGCAGCACATGCATTTGCCCAGTATAACATGGA
TCAGTTCACACCTGTGAAGATAGAAGGATATGAAGATCAGGTCTTAATTACAGAACACGG
TGACCTGGGTAATAGCAGATTTTTAGATCCAAGAAATAAAATTTCCTTTAAGTTTGATCA
CTTACGGAAAGAAGCAAGTGACCCGCAGCCAGAGGAAGTAGATGGAAGTCTGAAGTCTTG
GAGAGAATCCTGTGACAGCGCTCTAAGGGCCTATGTGAAAGATCATTATTCCAACGGCTT
CTGTACTGTTTATGCTAAAAATATTGATGGGCAGCAGACCATTATTGCATGTATTGAAAG
CCACCAATTTCAGCCTAAAAACTTCTGGAATGGTCGTTGGAGATCGGAGTGGAAGTTCAC
CATCACACCACCTACAGCCCAGGTGGTTGGAGTACTTAAAATTCAGGTTCACTATTATGA
AGATGGCAATGTTCAGTTGGTTAGTCATAAAGACGTACAGGATTCAGTAACTGTTTCGAA
TGAAGCCCAAACTGCCAAGGAGTTTATTAAAATCATAGAGCATGCAGAAAATGAGTATCA
GACAGCAATTAGTGAAAACTATCAAACAATGTCAGACACCACATTCAAGGCCTTGCGCCG
GCAACTTCCAGTGACCCGCACCAAAATCGACTGGAACAAGATACTCAGCTACAAGATTGG
CAAAGAAATGCAAAATGCTTAAAGGATGAACGTAGGATTCTTCAATACATGGAAAGAAAG
GATTCAGCGTGTGGTCTTATGATAAATAAGTGATTTATAAACAAGAGTGATATTTTGCTA
GGGCTTTCAAAGTTAACAGGTTTTCTAGCCTCACGGAATACTGTTGAACATATAGCATTG
TCTTGATTCTTTTGTGTTTTCCGCCTTGTGATTTTCTTTTTTCACTATATCTACTTGTAA
ATCCTTTGTTTGTTTTTCTAATTTCTTTTTAAATTCTGCCACATTTAATGATGGGGAGAG
AGATCTATCCTGGGGTCATTTTACTGTTTTGAAAATTTTCCTAGCCATGAAGCCCTGTTA
CTGATATAGACAGGTAATATGTTCAGTACTTTTCTATCCCATCCTTCAAAACACTTCTGG
TACTTCAGTGGTTTTTACTGATCGACCAATAGCTAAAGAGGCTATGCTGCAAACTGTAAC
TGAATGGAAGACACATTCATCCTTCTCCCTCCAATTGCTTTGATCATCATTTTTAACATC
TCATAACTAGTTTTCAAACATTTGGATTGGGGTTTTTCGGGTCCATTTTGGAGGCAAAGG
ACGTTTTCTGGAAATTCCATTATAGCCAGCTTCTCTGAGGAAGTTGTTTTTAAATCCAAA
GACTTGAACCACATTCCTTGCATATGTACGTGTTTGCTTTCTTTCCCTTCCCTTATTGTC
TCCCTCCCATTTAGTACCATTATAGTTATAGACGTGCATTTTTTAGAAGAGTTCTACTCA
TTTGTTATTATTTTTTTAATATTCAAAAACTGCTGACATACTAGGGATATAGTAGAGTAT
AAAACTTGAAGAAATGCAGATATTGAAGGAATTACAGGTATCTTGTGCTTTAATACTTTG
TGGCAGGATTGTACTATAAGCAAATGAATCAAACAGCTGTGTGAATCACAAACAAAAACT
AAAAATGAACCAAAGTGAAACGGATAACTTTCAGGCAGTATCTTTCTATTGTAACCTGTT
ATTTAAGGGAATACTAGTGAATTGTTCTAAATAGGATGTAAAACTTGTTCCAAATTACTC
TTCCTCAGTCTGCCTGCCAACTCAAGTGTAACTGTGATATAGTAACCCTTTCCAGCTTTA
CTGGCAGGTGTAGGTGTGATCTCAGAATACACAGGTGACATAGATATGATATGACAACTG
GTAATGGTGGATTCATTTACATTGTTTACACTTCTATGACCAGGCCTTAAGGGAAGGTCA
GTTTTTTAAAAACCAAGTAGTGTCTTCCTCCAAATACATGTCAAAAAAGAAGGGTGTTTG
TGCTTCAGCTTTGTTTTTGCTCAGTAATACAGTCAAGCAAGAGTTTGTTTCCAAGTGACC
TGTTGAGCTGTGTAAGCATTTTTGTTTATTTCAAATAAAATATATTTGTATTATTTGTCA
TTCATACTATCCATCCATACCACACTATCCTCTGTATCAGGTAGTCCAATAGAAATATAC
CTGTTTTGTTCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q6FHD5_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6FHD5_HUMAN

Aligned organism(s): 7 entry(ies)

More info

Aligned organism(s): 7 entry(ies)

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               5-175, gnl|bosTau2|chr11 (9165037-9164871)
               

               
               5-175, gnl|Mm7|chr1 (105355170-105355340)
               


               
               187-871, gnl|bosTau2|chr11 (9164886-9164216)
               

               
               187-871, gnl|Hg17|chr15 (87334436-87333747)
               

               
               187-871, gnl|Mm7|chr6 (17596680-17605897)
               


               
               1972-2352, gnl|bosTau2|chr22 (5670767-5670388)
               

               
               1972-2352, gnl|Mm7|chr1 (105357681-105358078)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-175, gnl|bosTau2|chr11 (9165037-9164871)
               

               
               5-175, gnl|Mm7|chr1 (105355170-105355340)
               


               
               187-871, gnl|bosTau2|chr11 (9164886-9164216)
               

               
               187-871, gnl|Hg17|chr15 (87334436-87333747)
               

               
               187-871, gnl|Mm7|chr6 (17596680-17605897)
               


               
               1972-2352, gnl|bosTau2|chr22 (5670767-5670388)
               

               
               1972-2352, gnl|Mm7|chr1 (105357681-105358078)

Expressed library(ies): 43 entry(ies)

More info

Expressed library(ies): 43 entry(ies)

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               cbl (1.37757)
               

               
               lin (0.873617)
               

               
               spl (0.859107)
               

               
               thg (0.760746)
               

               
               clu (0.598229)
               

               
               liv (0.585137)
               

               
               rec (0.519211)
               

               
               duo (0.518403)
               

               
               mcp (0.511945)
               

               
               mga (0.480615)
               

               
               jca (0.45584)
               

               
               lun (0.451467)
               

               
               cty (0.41632)
               

               
               fcc (0.39557)
               

               
               col (0.390016)
               

               
               ret (0.3862)
               

               
               tra (0.369276)
               

               
               sin (0.349895)
               

               
               ecc (0.345105)
               

               
               tbr (0.308356)
               

               
               fat (0.294855)
               

               
               tes (0.207814)
               

               
               fli (0.202881)
               

               
               jej (0.197844)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               ski (0.146735)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               eje (0.0988338)

Expressed library(ies): 43 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (1.37757)
               

               
               lin (0.873617)
               

               
               spl (0.859107)
               

               
               thg (0.760746)
               

               
               clu (0.598229)
               

               
               liv (0.585137)
               

               
               rec (0.519211)
               

               
               duo (0.518403)
               

               
               mcp (0.511945)
               

               
               mga (0.480615)
               

               
               jca (0.45584)
               

               
               lun (0.451467)
               

               
               cty (0.41632)
               

               
               fcc (0.39557)
               

               
               col (0.390016)
               

               
               ret (0.3862)
               

               
               tra (0.369276)
               

               
               sin (0.349895)
               

               
               ecc (0.345105)
               

               
               tbr (0.308356)
               

               
               fat (0.294855)
               

               
               tes (0.207814)
               

               
               fli (0.202881)
               

               
               jej (0.197844)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               ski (0.146735)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               eje (0.0988338)

	5-175, gnl\|bosTau2\|chr11 (9165037-9164871)
	5-175, gnl\|Mm7\|chr1 (105355170-105355340)

	187-871, gnl\|bosTau2\|chr11 (9164886-9164216)
	187-871, gnl\|Hg17\|chr15 (87334436-87333747)
	187-871, gnl\|Mm7\|chr6 (17596680-17605897)

	1972-2352, gnl\|bosTau2\|chr22 (5670767-5670388)
	1972-2352, gnl\|Mm7\|chr1 (105357681-105358078)

	cbl (1.37757)
	lin (0.873617)
	spl (0.859107)
	thg (0.760746)
	clu (0.598229)
	liv (0.585137)
	rec (0.519211)
	duo (0.518403)
	mcp (0.511945)
	mga (0.480615)
	jca (0.45584)
	lun (0.451467)
	cty (0.41632)
	fcc (0.39557)
	col (0.390016)
	ret (0.3862)
	tra (0.369276)
	sin (0.349895)
	ecc (0.345105)
	tbr (0.308356)
	fat (0.294855)
	tes (0.207814)
	fli (0.202881)
	jej (0.197844)
	nlu (0.191681)
	nep (0.183925)
	fty (0.17584)
	fbs (0.175346)
	nje (0.16592)
	nco (0.161734)
	ski (0.146735)
	lnt (0.142308)
	csk (0.140746)
	ssp (0.13552)
	ste (0.135208)
	pla (0.133672)
	lyg (0.133103)
	nmm (0.132802)
	kid (0.129735)
	sug (0.127291)
	ese (0.126502)
	eru (0.120048)
	eje (0.0988338)