Non-Coding RNA Search

Ss1.1-rret34_g2.5

Sequence:


               
               TTTCATTCAGATCAAAAGCTGTGTCAGACACAAAACTTATTTAATAATTAAAAAACAAGC
TTTTATATGCAGAACTGGTTTCTGAAGGAAGCATGCATGCAGCTGTTGGAAGATAGAAAG
TTGTCTAGGACTTGGGGGTTAGGAAGCCACAACTTCACACGTTTAAAACAAAAAACAAAA
CAAAACAAAAACTAACAACAACAACAACAAACACCCCAGTTGCCACTATGCCCAAACCCT
CTGGATGCTGAAAAAAAATGCCACTTTTGGCAAAAAAAAGTATGCAAGCTATTATTTAAA
AATGTGTAAAAATGCTATTTCTTTTTTCCTGTAAAATACTGCGGTTTATAGTTATTTACA
AATGTAAGCTTTGGTACAAGCTGACCTTTCTATAAGCGTGCTGCATTGGTAAATGAAAAA
AAAAAAAATGGGGCAAATGTTGGAGTCCTTTCCTTGTAAATTGCCAGCATCAGCTTAAAA
ACTCCTATATGTTACATATCGTACCATTTTAATCTATTCAACTTTCTTTGTATCTTCTGG
CTGTATGCTTTCTCTTTTAACTTTTTATATTGTCATTTTATATTAAATTTCTGTGTATAT
AATGTAAAACCACAATTTTTGAATAAAATTTAGTTCCTGCAGCTTGATTTAAATAGAGAA
ATTTTACTGGCACCTGCATCTTTCCAGATGCATGTATATCAGACAAAAATAAATAAATGA
AAACAAAGCAAGCAATGCACTATTAATTATACATTTTGATGTTCTATCATTAATATTGTA
CAGTACATTTTGGTTCACACAATTAAATCCACTGTTTTCTCAAATGTAAAATAAACCCAC
ATGCAGTTCCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTCATTCAGATCAAAAGCTGTGTCAGACACAAAACTTATTTAATAATTAAAAAACAAGC
TTTTATATGCAGAACTGGTTTCTGAAGGAAGCATGCATGCAGCTGTTGGAAGATAGAAAG
TTGTCTAGGACTTGGGGGTTAGGAAGCCACAACTTCACACGTTTAAAACAAAAAACAAAA
CAAAACAAAAACTAACAACAACAACAACAAACACCCCAGTTGCCACTATGCCCAAACCCT
CTGGATGCTGAAAAAAAATGCCACTTTTGGCAAAAAAAAGTATGCAAGCTATTATTTAAA
AATGTGTAAAAATGCTATTTCTTTTTTCCTGTAAAATACTGCGGTTTATAGTTATTTACA
AATGTAAGCTTTGGTACAAGCTGACCTTTCTATAAGCGTGCTGCATTGGTAAATGAAAAA
AAAAAAAATGGGGCAAATGTTGGAGTCCTTTCCTTGTAAATTGCCAGCATCAGCTTAAAA
ACTCCTATATGTTACATATCGTACCATTTTAATCTATTCAACTTTCTTTGTATCTTCTGG
CTGTATGCTTTCTCTTTTAACTTTTTATATTGTCATTTTATATTAAATTTCTGTGTATAT
AATGTAAAACCACAATTTTTGAATAAAATTTAGTTCCTGCAGCTTGATTTAAATAGAGAA
ATTTTACTGGCACCTGCATCTTTCCAGATGCATGTATATCAGACAAAAATAAATAAATGA
AAACAAAGCAAGCAATGCACTATTAATTATACATTTTGATGTTCTATCATTAATATTGTA
CAGTACATTTTGGTTCACACAATTAAATCCACTGTTTTCTCAAATGTAAAATAAACCCAC
ATGCAGTTCCTG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               637-735, - strand, RNAz p=0.567258

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               637-735, - strand, RNAz p=0.567258

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-852, gnl|bosTau2|chr24 (3537562-3536714)
               

               
               1-852, gnl|Hg17|chr18 (71130050-71130882)
               

               
               1-852, gnl|Mm7|chr18 (84361642-84360771)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-852, gnl|bosTau2|chr24 (3537562-3536714)
               

               
               1-852, gnl|Hg17|chr18 (71130050-71130882)
               

               
               1-852, gnl|Mm7|chr18 (84361642-84360771)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               fbs (0.175346)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

	1-852, gnl\|bosTau2\|chr24 (3537562-3536714)
	1-852, gnl\|Hg17\|chr18 (71130050-71130882)
	1-852, gnl\|Mm7\|chr18 (84361642-84360771)

	fbs (0.175346)
	nmm (0.132802)
	kid (0.129735)
	ret (0.128733)
	sug (0.127291)
	bla (0.124347)
	nbm (0.0993246)
	ldo (0.0970026)