Non-Coding RNA Search

Ss1.1-rret34_h18.5

Sequence:


               
               TAAAACAGGAACTCATGAATCCACACGGATTTTAACTGATTAATCAGGAAAACAAGAAAG
CTCTTCTTTACTACAGAATATTGACAAATAAATGTGGATGGAATTTTAAAATTACTTTTT
GGCAACCACTGTAGTAATAATATGGGCAACAAATACCAATGGATGATAAAACTAGGGGCT
TAAAATGGGATGGAGAAATAAGATATTTACATAGACTCAAGGTAGCTTCACGAAAAATAC
ATGTTAATCGTGTGTGTGTATAATATATAACATATATACACACATATACATGTATATAAA
ACTTTAGAGAAACCTGGCAGACACCATTTTAATCGGGTGATCAATGTTACCACCATGGGT
AAGAGAACATCACGTGCCATCTGACAGCATGTAATGAAAAGAACTCAGCATCACCTCTGG
ATCATTCTGCCACAAACACACAACCGGGGTCTAATCATGAGGAAATAT------------
------------------------------------------------------------
TAGAGGAAAGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAAACAGGAACTCATGAATCCACACGGATTTTAACTGATTAATCAGGAAAACAAGAAAG
CTCTTCTTTACTACAGAATATTGACAAATAAATGTGGATGGAATTTTAAAATTACTTTTT
GGCAACCACTGTAGTAATAATATGGGCAACAAATACCAATGGATGATAAAACTAGGGGCT
TAAAATGGGATGGAGAAATAAGATATTTACATAGACTCAAGGTAGCTTCACGAAAAATAC
ATGTTAATCGTGTGTGTGTATAATATATAACATATATACACACATATACATGTATATAAA
ACTTTAGAGAAACCTGGCAGACACCATTTTAATCGGGTGATCAATGTTACCACCATGGGT
AAGAGAACATCACGTGCCATCTGACAGCATGTAATGAAAAGAACTCAGCATCACCTCTGG
ATCATTCTGCCACAAACACACAACCGGGGTCTAATCATGAGGAAATAT------------
------------------------------------------------------------
TAGAGGAAAGAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               202-356, + strand, RNAz p=0.975352

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               202-356, + strand, RNAz p=0.975352

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               10-448, gnl|bosTau2|chr1 (40440825-40440407)
               

               
               10-448, gnl|canFam2|chr33 (27746345-27746701)
               

               
               10-448, gnl|dasNov1|scaffold_36661 (2709-3058)
               

               
               10-448, gnl|hg17|chr3 (122628284-122628657)
               

               
               10-448, gnl|Hg17|chr3 (122628311-122628730)
               

               
               10-448, gnl|mm7|chr16 (36816376-36816036)
               

               
               10-448, gnl|Mm7|chr16 (36816369-36815982)
               

               
               10-448, gnl|oryCun1|scaffold_190531 (9133-9459)
               

               
               10-448, gnl|panTro1|chr2 (124321555-124321928)
               

               
               10-448, gnl|rheMac2|chr2 (41419654-41420025)
               

               
               10-448, gnl|rn3|chr11 (65520250-65520546)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-448, gnl|bosTau2|chr1 (40440825-40440407)
               

               
               10-448, gnl|canFam2|chr33 (27746345-27746701)
               

               
               10-448, gnl|dasNov1|scaffold_36661 (2709-3058)
               

               
               10-448, gnl|hg17|chr3 (122628284-122628657)
               

               
               10-448, gnl|Hg17|chr3 (122628311-122628730)
               

               
               10-448, gnl|mm7|chr16 (36816376-36816036)
               

               
               10-448, gnl|Mm7|chr16 (36816369-36815982)
               

               
               10-448, gnl|oryCun1|scaffold_190531 (9133-9459)
               

               
               10-448, gnl|panTro1|chr2 (124321555-124321928)
               

               
               10-448, gnl|rheMac2|chr2 (41419654-41420025)
               

               
               10-448, gnl|rn3|chr11 (65520250-65520546)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cbe (0.239234)
               

               
               ret (0.128733)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.239234)
               

               
               ret (0.128733)

	10-448, gnl\|bosTau2\|chr1 (40440825-40440407)
	10-448, gnl\|canFam2\|chr33 (27746345-27746701)
	10-448, gnl\|dasNov1\|scaffold_36661 (2709-3058)
	10-448, gnl\|hg17\|chr3 (122628284-122628657)
	10-448, gnl\|Hg17\|chr3 (122628311-122628730)
	10-448, gnl\|mm7\|chr16 (36816376-36816036)
	10-448, gnl\|Mm7\|chr16 (36816369-36815982)
	10-448, gnl\|oryCun1\|scaffold_190531 (9133-9459)
	10-448, gnl\|panTro1\|chr2 (124321555-124321928)
	10-448, gnl\|rheMac2\|chr2 (41419654-41420025)
	10-448, gnl\|rn3\|chr11 (65520250-65520546)