Ss1.1-rret34_h3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAACCCAAACTCACGCCTCTGTCAGAAATTTCTCAGAGACTCCTTAAACTTTACTCGGAT AAATTTGGTTCTGAAAATGTCAAAATGATACAGGATTCTGGCAAGGTCAACCCTAAGGAT CTGGATTCCAAGTACGCGTATATCCAGGTGACGCATGTGGTCCCGTTCTTTGATGAAAAA GAACTGCAAGAAAGAAAAACGGAGTTCGAAAGGTCTCACAACATTCGCCGCTTCATGTTT GAGATGCCCTTCACCCAGACGGGGAAGAGGCAGGGGGGCGTGGAGGAGCAGTGCAAACGG CGCACCATCCTGACAGCGATCCACTGCTTCCCTTACGTGAAGAAGCGGATCCCCGTCATG TACCAGCACCACACGGACCTGAACCCCATCGAGGTGGCCATTGATGAGATGAGCAAGAAG GTGGCCGAGCTCCGGCAGCTGTGCGCCTCGGCCGAGGTGGACATGATCAAGCTGCAGCTC AAGCTCCAGGGCAGCGTGAGCGTCCAGGTCAACGCGGGTCCTCTAGCGTATGCCCGAGCT TTCTTAGATGACACAAACACGAAAAGATACCCTGACAATAAAGTGAAGCTGCTGAAGGAG GTTTTCAGGCAGTTTGTGGAAGCTTGCGGTCAAGCCTTAGCGGTAAATGAGCGGCTGATC AAAGAGGACCAGTTAGAGTATCAGGAAGAAATGAAGGCCAACTACCGGGAAATGGCCAGA GAGCTTTCGGAGATCATGCATGAGCAGATCTGCCCCCTGGAGGAGAAGACGAGCGTCCTG CCGAATTCCCTGCACATCTTCAACGCCATCAGCGGGACGCCAACCAGCACGATGGTCCAC GGCATGACCAGCTCGTCCTCCGTGGTGTGACTGCGCCTCGTGGGCCGCGTTGTGGGGACT TGCTTTGTCATTTGCAAACTCAGGATGATTTCTAAAGCTAATCACTGGGCACGTGCAAGA CACGGGGGAGACCGAGCACAAGGAGAAGCTGAGGGAGATAGAGAGCTGTGTTATTTCGTA GAAGATTTTCTAGAGGACTCAGAAGAGGGTACACGTATTTTTTTAAATCTCGGCAATAGT CAACATTTTCATGATGTCTTTTAACAGAGGTGTGTGATGGACACGCTCCAGCTGGAGTTG AATTTTATTCTTCCTTACAGAGTAGTATTAAAATAAAATGGCCTGCAGAAAACAAGGGTT CTGGAATGTACGTAGCACTGACATTGAGGCCAGGGGGAACTAATCTTTCGCCTCTAGGCT AAGCTGGAAAATCTTGAAAATATTTTTTTCCTGTGGCACATTCAGGTTGAATACAAGAAC TTATTTTTGTGACTCGTTTTTGATGACCCAAGGGAACTGACCATTGTCATTTTTGTACCA GTGAACCAGGACGTTTAGTGCTTTTATACTCATTTACCTGCGTTGAAAACCTATGAAAGC TTAAGTAACTACGTGAGCTTAAAATTAGTCAAGCAGTTTAGAACCAAAGGCCCGCATTAC TAAACACGACTCTGCTAAGCATTTGAAGCAGTGCAGGATATCGTTGTGTACATAGCATTT GTTGATACCGTCTTGGCATCGTGTACAGACACGTCCCCACATTTCTACGTTTTTACTACT CACATCAGCTTCTGCATAAAGGTCGTGACAGATTTGTGCTGTTCTTAGTACATGCGATAC CCTTGACGTTCCTGTTTTACTCTTGTACATAAAAACGTGCAATATGGAGATGTATACAGT CTTTGCTATGTTAGGTTGAGAAACGGTTTTAACATTTTCATCCTTTTGCCAAAATGGTGG AGTGTGTCTCTGGTAAAGTCATAAATGTGGTGAATAGTGGTGTAATTTAAAGCTTTCACC ATGTTCTATTTTCTTTTCAGACATTAATTTAGTAATTTTATATTGGGGAAAATAAAGGTT TTTAATTTTATTTAACTAGAATCTCTGCCCTGCTGTAATTAAACATCCTGTACCACGGCT GTATTAAAAGTAACGTTGCTGACTAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAACCCAAACTCACGCCTCTGTCAGAAATTTCTCAGAGACTCCTTAAACTTTACTCGGAT AAATTTGGTTCTGAAAATGTCAAAATGATACAGGATTCTGGCAAGGTCAACCCTAAGGAT CTGGATTCCAAGTACGCGTATATCCAGGTGACGCATGTGGTCCCGTTCTTTGATGAAAAA GAACTGCAAGAAAGAAAAACGGAGTTCGAAAGGTCTCACAACATTCGCCGCTTCATGTTT GAGATGCCCTTCACCCAGACGGGGAAGAGGCAGGGGGGCGTGGAGGAGCAGTGCAAACGG CGCACCATCCTGACAGCGATCCACTGCTTCCCTTACGTGAAGAAGCGGATCCCCGTCATG TACCAGCACCACACGGACCTGAACCCCATCGAGGTGGCCATTGATGAGATGAGCAAGAAG GTGGCCGAGCTCCGGCAGCTGTGCGCCTCGGCCGAGGTGGACATGATCAAGCTGCAGCTC AAGCTCCAGGGCAGCGTGAGCGTCCAGGTCAACGCGGGTCCTCTAGCGTATGCCCGAGCT TTCTTAGATGACACAAACACGAAAAGATACCCTGACAATAAAGTGAAGCTGCTGAAGGAG GTTTTCAGGCAGTTTGTGGAAGCTTGCGGTCAAGCCTTAGCGGTAAATGAGCGGCTGATC AAAGAGGACCAGTTAGAGTATCAGGAAGAAATGAAGGCCAACTACCGGGAAATGGCCAGA GAGCTTTCGGAGATCATGCATGAGCAGATCTGCCCCCTGGAGGAGAAGACGAGCGTCCTG CCGAATTCCCTGCACATCTTCAACGCCATCAGCGGGACGCCAACCAGCACGATGGTCCAC GGCATGACCAGCTCGTCCTCCGTGGTGTGACTGCGCCTCGTGGGCCGCGTTGTGGGGACT TGCTTTGTCATTTGCAAACTCAGGATGATTTCTAAAGCTAATCACTGGGCACGTGCAAGA CACGGGGGAGACCGAGCACAAGGAGAAGCTGAGGGAGATAGAGAGCTGTGTTATTTCGTA GAAGATTTTCTAGAGGACTCAGAAGAGGGTACACGTATTTTTTTAAATCTCGGCAATAGT CAACATTTTCATGATGTCTTTTAACAGAGGTGTGTGATGGACACGCTCCAGCTGGAGTTG AATTTTATTCTTCCTTACAGAGTAGTATTAAAATAAAATGGCCTGCAGAAAACAAGGGTT CTGGAATGTACGTAGCACTGACATTGAGGCCAGGGGGAACTAATCTTTCGCCTCTAGGCT AAGCTGGAAAATCTTGAAAATATTTTTTTCCTGTGGCACATTCAGGTTGAATACAAGAAC TTATTTTTGTGACTCGTTTTTGATGACCCAAGGGAACTGACCATTGTCATTTTTGTACCA GTGAACCAGGACGTTTAGTGCTTTTATACTCATTTACCTGCGTTGAAAACCTATGAAAGC TTAAGTAACTACGTGAGCTTAAAATTAGTCAAGCAGTTTAGAACCAAAGGCCCGCATTAC TAAACACGACTCTGCTAAGCATTTGAAGCAGTGCAGGATATCGTTGTGTACATAGCATTT GTTGATACCGTCTTGGCATCGTGTACAGACACGTCCCCACATTTCTACGTTTTTACTACT CACATCAGCTTCTGCATAAAGGTCGTGACAGATTTGTGCTGTTCTTAGTACATGCGATAC CCTTGACGTTCCTGTTTTACTCTTGTACATAAAAACGTGCAATATGGAGATGTATACAGT CTTTGCTATGTTAGGTTGAGAAACGGTTTTAACATTTTCATCCTTTTGCCAAAATGGTGG AGTGTGTCTCTGGTAAAGTCATAAATGTGGTGAATAGTGGTGTAATTTAAAGCTTTCACC ATGTTCTATTTTCTTTTCAGACATTAATTTAGTAATTTTATATTGGGGAAAATAAAGGTT TTTAATTTTATTTAACTAGAATCTCTGCCCTGCTGTAATTAAACATCCTGTACCACGGCT GTATTAAAAGTAACGTTGCTGACTAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 103-316, gnl|bosTau2|chr12 (40780067-40780280) | |
| 103-316, gnl|Hg17|chr13 (98255467-98255254) | |
| 103-316, gnl|Mm7|chr14 (115959720-115959507) | |
| 503-609, gnl|bosTau2|chr12 (40789127-40789233) | |
| 503-609, gnl|canFam2|chr22 (51831265-51831388) | |
| 503-609, gnl|danRer3|chr6 (7928956-7929077) | |
| 503-609, gnl|dasNov1|scaffold_141147 (4037-4156) | |
| 503-609, gnl|echTel1|scaffold_286385 (108935-109059) | |
| 503-609, gnl|fr1|chrUn (19338142-19338261) | |
| 503-609, gnl|galGal2|chr1 (137439713-137439595) | |
| 503-609, gnl|hg17|chr13 (98247642-98247765) | |
| 503-609, gnl|Hg17|chr13 (98247749-98247643) | |
| 503-609, gnl|loxAfr1|scaffold_585 (10733-10858) | |
| 503-609, gnl|mm7|chr14 (115950945-115951067) | |
| 503-609, gnl|Mm7|chr14 (115951051-115950946) | |
| 503-609, gnl|monDom2|scaffold_11 (53687198-53687073) | |
| 503-609, gnl|oryCun1|scaffold_214940 (147185-147062) | |
| 503-609, gnl|panTro1|chr14 (81495564-81495687) | |
| 503-609, gnl|rheMac2|chr17 (79170381-79170504) | |
| 503-609, gnl|rn3|chr15 (106650886-106651009) | |
| 503-609, gnl|tetNig1|chr2 (10867889-10867775) | |
| 503-609, gnl|xenTro1|scaffold_340 (39207-39328) | |
| 746-2002, gnl|bosTau2|chr12 (40791303-40792589) | |
| 746-2002, gnl|Hg17|chr13 (98245005-98243747) | |
| 746-2002, gnl|Mm7|chr14 (115948018-115946554) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 103-316, gnl|bosTau2|chr12 (40780067-40780280) | |
| 103-316, gnl|Hg17|chr13 (98255467-98255254) | |
| 103-316, gnl|Mm7|chr14 (115959720-115959507) | |
| 503-609, gnl|bosTau2|chr12 (40789127-40789233) | |
| 503-609, gnl|canFam2|chr22 (51831265-51831388) | |
| 503-609, gnl|danRer3|chr6 (7928956-7929077) | |
| 503-609, gnl|dasNov1|scaffold_141147 (4037-4156) | |
| 503-609, gnl|echTel1|scaffold_286385 (108935-109059) | |
| 503-609, gnl|fr1|chrUn (19338142-19338261) | |
| 503-609, gnl|galGal2|chr1 (137439713-137439595) | |
| 503-609, gnl|hg17|chr13 (98247642-98247765) | |
| 503-609, gnl|Hg17|chr13 (98247749-98247643) | |
| 503-609, gnl|loxAfr1|scaffold_585 (10733-10858) | |
| 503-609, gnl|mm7|chr14 (115950945-115951067) | |
| 503-609, gnl|Mm7|chr14 (115951051-115950946) | |
| 503-609, gnl|monDom2|scaffold_11 (53687198-53687073) | |
| 503-609, gnl|oryCun1|scaffold_214940 (147185-147062) | |
| 503-609, gnl|panTro1|chr14 (81495564-81495687) | |
| 503-609, gnl|rheMac2|chr17 (79170381-79170504) | |
| 503-609, gnl|rn3|chr15 (106650886-106651009) | |
| 503-609, gnl|tetNig1|chr2 (10867889-10867775) | |
| 503-609, gnl|xenTro1|scaffold_340 (39207-39328) | |
| 746-2002, gnl|bosTau2|chr12 (40791303-40792589) | |
| 746-2002, gnl|Hg17|chr13 (98245005-98243747) | |
| 746-2002, gnl|Mm7|chr14 (115948018-115946554) |
| Expressed library(ies): 24 entry(ies) | More info |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
| liv (1.31656) | |
| spc (0.680195) | |
| tra (0.492368) | |
| fco (0.471624) | |
| kid (0.389206) | |
| ret (0.3862) | |
| mga (0.32041) | |
| ski (0.29347) | |
| lin (0.291206) | |
| cbe (0.239234) | |
| ece (0.229305) | |
| cty (0.20816) | |
| hea (0.204499) | |
| aor (0.195274) | |
| sag (0.182715) | |
| fbs (0.175346) | |
| rec (0.17307) | |
| bfe (0.149858) | |
| ste (0.135208) | |
| cbr (0.127975) | |
| bla (0.124347) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| ebs (0.118301) |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| liv (1.31656) | |
| spc (0.680195) | |
| tra (0.492368) | |
| fco (0.471624) | |
| kid (0.389206) | |
| ret (0.3862) | |
| mga (0.32041) | |
| ski (0.29347) | |
| lin (0.291206) | |
| cbe (0.239234) | |
| ece (0.229305) | |
| cty (0.20816) | |
| hea (0.204499) | |
| aor (0.195274) | |
| sag (0.182715) | |
| fbs (0.175346) | |
| rec (0.17307) | |
| bfe (0.149858) | |
| ste (0.135208) | |
| cbr (0.127975) | |
| bla (0.124347) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| ebs (0.118301) |