Ss1.1-rret34_j5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGAGGACTTGAAGATGCTAATCAGACACATGGAGCACTGGGCACATAGGCCATTCCCTAA ACTGCAATTTGAAGATTTTATTGACAGAGTTGAATATCTGGGAAATAAAAAGGAAGTTCA GACCTGTTTGAAACGAATTCGACTTGATCTACCTATTTTACATGATGATTTTATTAGCAA TAATGATGATGTTGGAGAAGATAATGGCCATGATGTAACTGTTACTGAATTAGACCCCTT TTTGACAAACTCATCTGAAAGTGCAAAGTTTGCTTCTGAGTCAAGTAGAAGCCTAACAGA AGAACAACAACAAAGAATTGAGAGAAATAAACAATTGGCCTTGGAAAGAAGACAGGCGAA GCTACTGAGTAATAGTCAATCTCCAGGAAATGACTTGCTAATGAACACACCCAGCGCACA AACACTTGAAAAGGATAATAAAGGTGAAGATCAAAAAGAGGAAGAATCAAATGGATTTAA CAAAGAACTTCTAGACAATCCTCATAATGATGCTGCTGCCAATACTGTAAATGAAGAGGA GGACTTAAATATAGAGATAACACAACTGGACCAATCCTTTTAAAAGGTACAACAGTAACT TAAGTCATCTAGAAATGTTACTGCGGTTTGATAGACCTCAACTGAGAAAAATCTATTAAT TTACTATCTTCAGAATTTGAGATGACTACCACTTAGTCTGCTTTACGTAAAAATCCTTAT TTAGTGAAACTTTTAAAGATTCGTCTTTAAAATCTGGTATTGTATATAATGATACTTGTT TCTTATTAACTTTCATTCAGTCTATTTATTGTCCTTAGTGTTTATTTTTATAATAGGCAT GACTTTGTAAAAATGATCGGTAGTTAATAATAAGTAGCTTCTGCTGCTAGTGTGCCATTG AATGCCCTGTTTTACTAAATTGGGTGGTGTTTTAAGTTGTAAATATATAAAAATATTAAT GTTCTTTTTCTAAAAAATAAAAAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGAGGACTTGAAGATGCTAATCAGACACATGGAGCACTGGGCACATAGGCCATTCCCTAA ACTGCAATTTGAAGATTTTATTGACAGAGTTGAATATCTGGGAAATAAAAAGGAAGTTCA GACCTGTTTGAAACGAATTCGACTTGATCTACCTATTTTACATGATGATTTTATTAGCAA TAATGATGATGTTGGAGAAGATAATGGCCATGATGTAACTGTTACTGAATTAGACCCCTT TTTGACAAACTCATCTGAAAGTGCAAAGTTTGCTTCTGAGTCAAGTAGAAGCCTAACAGA AGAACAACAACAAAGAATTGAGAGAAATAAACAATTGGCCTTGGAAAGAAGACAGGCGAA GCTACTGAGTAATAGTCAATCTCCAGGAAATGACTTGCTAATGAACACACCCAGCGCACA AACACTTGAAAAGGATAATAAAGGTGAAGATCAAAAAGAGGAAGAATCAAATGGATTTAA CAAAGAACTTCTAGACAATCCTCATAATGATGCTGCTGCCAATACTGTAAATGAAGAGGA GGACTTAAATATAGAGATAACACAACTGGACCAATCCTTTTAAAAGGTACAACAGTAACT TAAGTCATCTAGAAATGTTACTGCGGTTTGATAGACCTCAACTGAGAAAAATCTATTAAT TTACTATCTTCAGAATTTGAGATGACTACCACTTAGTCTGCTTTACGTAAAAATCCTTAT TTAGTGAAACTTTTAAAGATTCGTCTTTAAAATCTGGTATTGTATATAATGATACTTGTT TCTTATTAACTTTCATTCAGTCTATTTATTGTCCTTAGTGTTTATTTTTATAATAGGCAT GACTTTGTAAAAATGATCGGTAGTTAATAATAAGTAGCTTCTGCTGCTAGTGTGCCATTG AATGCCCTGTTTTACTAAATTGGGTGGTGTTTTAAGTTGTAAATATATAAAAATATTAAT GTTCTTTTTCTAAAAAATAAAAAT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
| 1-121, gnl|bosTau2|chr10 (7179576-7179696) | |
| 1-121, gnl|canFam2|chr30 (33642873-33642995) | |
| 1-121, gnl|canFam2|chr30 (33642872-33643026) | |
| 1-121, gnl|canFam2|chr30 (33642874-33642995) | |
| 1-121, gnl|danRer3|chr7 (23222529-23222369) | |
| 1-121, gnl|dasNov1|scaffold_232276 (1659-1784) | |
| 1-121, gnl|dasNov1|scaffold_232276 (1660-1784) | |
| 1-121, gnl|dasNov1|scaffold_34998 (407-561) | |
| 1-121, gnl|echTel1|scaffold_210318 (6978-7132) | |
| 1-121, gnl|echTel1|scaffold_307466 (12849-12742) | |
| 1-121, gnl|echTel1|scaffold_307466 (12848-12742) | |
| 1-121, gnl|fr1|chrUn (228167386-228167581) | |
| 1-121, gnl|fr1|chrUn (228167385-228167536) | |
| 1-121, gnl|fr1|chrUn (228167387-228167581) | |
| 1-121, gnl|galGal2|chr10 (19146605-19146761) | |
| 1-121, gnl|hg17|chr15 (64428706-64428860) | |
| 1-121, gnl|Hg17|chr15 (64428827-64428707) | |
| 1-121, gnl|hg17|chr16 (56683949-56684074) | |
| 1-121, gnl|hg17|chrX (53366591-53366715) | |
| 1-121, gnl|loxAfr1|scaffold_195191 (1095-986) | |
| 1-121, gnl|loxAfr1|scaffold_3025 (12130-11976) | |
| 1-121, gnl|loxAfr1|scaffold_3025 (12128-12007) | |
| 1-121, gnl|mm7|chr9 (64323775-64323650) | |
| 1-121, gnl|mm7|chr9 (64323776-64323622) | |
| 1-121, gnl|mm7|chr9 (64323772-64323650) | |
| 1-121, gnl|Mm7|chr9 (64323653-64323773) | |
| 1-121, gnl|monDom2|scaffold_12 (46547701-46547547) | |
| 1-121, gnl|monDom2|scaffold_16 (49268502-49268392) | |
| 1-121, gnl|monDom2|scaffold_18 (3094288-3094163) | |
| 1-121, gnl|oryCun1|scaffold_105999 (1159-1284) | |
| 1-121, gnl|oryCun1|scaffold_105999 (1158-1310) | |
| 1-121, gnl|oryCun1|scaffold_105999 (1162-1284) | |
| 1-121, gnl|panTro1|chr16 (64940526-64940680) | |
| 1-121, gnl|panTro1|chr18 (50804902-50805027) | |
| 1-121, gnl|panTro1|chrX (54615884-54616008) | |
| 1-121, gnl|rheMac2|chr20 (56454383-56454508) | |
| 1-121, gnl|rheMac2|chr7 (44875610-44875764) | |
| 1-121, gnl|rheMac2|chrX (51785673-51785797) | |
| 1-121, gnl|rn3|chr8 (68510880-68510726) | |
| 1-121, gnl|rn3|chr9 (113042184-113042309) | |
| 1-121, gnl|rn3|chr9 (113042185-113042309) | |
| 1-121, gnl|tetNig1|chrUn_random (6591275-6591084) | |
| 1-121, gnl|tetNig1|chrUn_random (6591276-6591148) | |
| 1-121, gnl|tetNig1|chrUn_random (6591274-6591084) | |
| 1-121, gnl|xenTro1|scaffold_862 (278311-278454) | |
| 392-773, gnl|bosTau2|chr10 (5335353-5335739) | |
| 392-773, gnl|Hg17|chr15 (64416574-64416207) |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-121, gnl|bosTau2|chr10 (7179576-7179696) | |
| 1-121, gnl|canFam2|chr30 (33642873-33642995) | |
| 1-121, gnl|canFam2|chr30 (33642872-33643026) | |
| 1-121, gnl|canFam2|chr30 (33642874-33642995) | |
| 1-121, gnl|danRer3|chr7 (23222529-23222369) | |
| 1-121, gnl|dasNov1|scaffold_232276 (1659-1784) | |
| 1-121, gnl|dasNov1|scaffold_232276 (1660-1784) | |
| 1-121, gnl|dasNov1|scaffold_34998 (407-561) | |
| 1-121, gnl|echTel1|scaffold_210318 (6978-7132) | |
| 1-121, gnl|echTel1|scaffold_307466 (12849-12742) | |
| 1-121, gnl|echTel1|scaffold_307466 (12848-12742) | |
| 1-121, gnl|fr1|chrUn (228167386-228167581) | |
| 1-121, gnl|fr1|chrUn (228167385-228167536) | |
| 1-121, gnl|fr1|chrUn (228167387-228167581) | |
| 1-121, gnl|galGal2|chr10 (19146605-19146761) | |
| 1-121, gnl|hg17|chr15 (64428706-64428860) | |
| 1-121, gnl|Hg17|chr15 (64428827-64428707) | |
| 1-121, gnl|hg17|chr16 (56683949-56684074) | |
| 1-121, gnl|hg17|chrX (53366591-53366715) | |
| 1-121, gnl|loxAfr1|scaffold_195191 (1095-986) | |
| 1-121, gnl|loxAfr1|scaffold_3025 (12130-11976) | |
| 1-121, gnl|loxAfr1|scaffold_3025 (12128-12007) | |
| 1-121, gnl|mm7|chr9 (64323775-64323650) | |
| 1-121, gnl|mm7|chr9 (64323776-64323622) | |
| 1-121, gnl|mm7|chr9 (64323772-64323650) | |
| 1-121, gnl|Mm7|chr9 (64323653-64323773) | |
| 1-121, gnl|monDom2|scaffold_12 (46547701-46547547) | |
| 1-121, gnl|monDom2|scaffold_16 (49268502-49268392) | |
| 1-121, gnl|monDom2|scaffold_18 (3094288-3094163) | |
| 1-121, gnl|oryCun1|scaffold_105999 (1159-1284) | |
| 1-121, gnl|oryCun1|scaffold_105999 (1158-1310) | |
| 1-121, gnl|oryCun1|scaffold_105999 (1162-1284) | |
| 1-121, gnl|panTro1|chr16 (64940526-64940680) | |
| 1-121, gnl|panTro1|chr18 (50804902-50805027) | |
| 1-121, gnl|panTro1|chrX (54615884-54616008) | |
| 1-121, gnl|rheMac2|chr20 (56454383-56454508) | |
| 1-121, gnl|rheMac2|chr7 (44875610-44875764) | |
| 1-121, gnl|rheMac2|chrX (51785673-51785797) | |
| 1-121, gnl|rn3|chr8 (68510880-68510726) | |
| 1-121, gnl|rn3|chr9 (113042184-113042309) | |
| 1-121, gnl|rn3|chr9 (113042185-113042309) | |
| 1-121, gnl|tetNig1|chrUn_random (6591275-6591084) | |
| 1-121, gnl|tetNig1|chrUn_random (6591276-6591148) | |
| 1-121, gnl|tetNig1|chrUn_random (6591274-6591084) | |
| 1-121, gnl|xenTro1|scaffold_862 (278311-278454) | |
| 392-773, gnl|bosTau2|chr10 (5335353-5335739) | |
| 392-773, gnl|Hg17|chr15 (64416574-64416207) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| mga (0.160205) | |
| liv (0.146284) | |
| ret (0.128733) | |
| jca (0.11396) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mga (0.160205) | |
| liv (0.146284) | |
| ret (0.128733) | |
| jca (0.11396) |