Non-Coding RNA Search

Ss1.1-rret34_m23.5

Sequence:


               
               ACAACCCACTACACCTGTTTCCTCCTTCACCTCTGGTTCCATGTTGGGCCGAACAGACAC
AGCCCTCACCAACACCTACAGTGCTCTGCCACCCATGCCCAGCTTCACCATGGCAAATAA
CCTGCCTATGCAACCCCCAGTCCCCAGCCAGACCTCCTCGTACTCCTGCATGCTGCCCAC
CAGCCCTTCGGTGAACGGGCGGAGTTATGATACGTACACACCCCCCCACATGCAGACACA
CATGAACAGTCAGCCGATGGGCACCTCGGGCACCACTTCCACAGGACTCATTTCCCCTGG
TGTGTCAGTTCCAGTTCAAGTTCCTGGAAGTGAACCTGATATGTCTCAATATTGGCCAAG
ATTACAGTAAAAAACAAAAAACAAAAACAATCAAAAAAACAAAAAGAAAGGATATATTGT
GTTAACTCAGTCAGTGACTCTGTGGACACAACAGTTGGGCGTTCAGGAAGGAAAGAAAAA
TGGCTGTTAGAAGCACTTCAGTTCTGCAATTGTGTCCTGTGTTGTACCACTGGGGAATGG
ACTTGAAACAAGGACCTTTGTATACAGAAGGCGCTATATCAGTTGGAACAAATCTTCATT
TTGGTATCCAAACTTTTATTCATTTTGGTGTATTATTTGTAAATGGGCATTTGTATGTTA
TAATGAAAAAAGAACAACGTAGACTGGATGGATGTTTGATCCCTGTTGGTCATGAAGGTG
TTAAAAACAACAAAAAACAAAGGAAATCATGATCAACAAGCTTTGCCATGAATTTAAGAG
TTTTATCAAGATATATCGAATACTTCTACCCATCTGTTCATAGTTTATGGACTGATGTTC
CAAGTTTGTATCATTCCTTTGCATATAATTAAACCTGGAACAACATGCACTAGATTTATG
TAAGAAATATCTGTTGGTTTTCCAAAGGTTGTTAACAGATGAAGTTTATGTGCAAAAAAA
AGGGTAAGCTATAAATTCAAGGACGAAAAAAGTTGATAGCTAAAAGGTAGAGTGTGTCTT
CGATATAATCCAATTTGTTTTATGTCAAAATGTAAGTATTCGTCTTCCCTAGAAATCCTC
AGAATGATTTCTATAATAAAATTAATTTCATTTATATTTGACAAGAATACGCTATAGATG
TTTTATACACATTTTCATGCAATCATAAGTTTCTTTTTTGGCCAGCAAAAGTTAATTGTT
CTTAGATATAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAACCCACTACACCTGTTTCCTCCTTCACCTCTGGTTCCATGTTGGGCCGAACAGACAC
AGCCCTCACCAACACCTACAGTGCTCTGCCACCCATGCCCAGCTTCACCATGGCAAATAA
CCTGCCTATGCAACCCCCAGTCCCCAGCCAGACCTCCTCGTACTCCTGCATGCTGCCCAC
CAGCCCTTCGGTGAACGGGCGGAGTTATGATACGTACACACCCCCCCACATGCAGACACA
CATGAACAGTCAGCCGATGGGCACCTCGGGCACCACTTCCACAGGACTCATTTCCCCTGG
TGTGTCAGTTCCAGTTCAAGTTCCTGGAAGTGAACCTGATATGTCTCAATATTGGCCAAG
ATTACAGTAAAAAACAAAAAACAAAAACAATCAAAAAAACAAAAAGAAAGGATATATTGT
GTTAACTCAGTCAGTGACTCTGTGGACACAACAGTTGGGCGTTCAGGAAGGAAAGAAAAA
TGGCTGTTAGAAGCACTTCAGTTCTGCAATTGTGTCCTGTGTTGTACCACTGGGGAATGG
ACTTGAAACAAGGACCTTTGTATACAGAAGGCGCTATATCAGTTGGAACAAATCTTCATT
TTGGTATCCAAACTTTTATTCATTTTGGTGTATTATTTGTAAATGGGCATTTGTATGTTA
TAATGAAAAAAGAACAACGTAGACTGGATGGATGTTTGATCCCTGTTGGTCATGAAGGTG
TTAAAAACAACAAAAAACAAAGGAAATCATGATCAACAAGCTTTGCCATGAATTTAAGAG
TTTTATCAAGATATATCGAATACTTCTACCCATCTGTTCATAGTTTATGGACTGATGTTC
CAAGTTTGTATCATTCCTTTGCATATAATTAAACCTGGAACAACATGCACTAGATTTATG
TAAGAAATATCTGTTGGTTTTCCAAAGGTTGTTAACAGATGAAGTTTATGTGCAAAAAAA
AGGGTAAGCTATAAATTCAAGGACGAAAAAAGTTGATAGCTAAAAGGTAGAGTGTGTCTT
CGATATAATCCAATTTGTTTTATGTCAAAATGTAAGTATTCGTCTTCCCTAGAAATCCTC
AGAATGATTTCTATAATAAAATTAATTTCATTTATATTTGACAAGAATACGCTATAGATG
TTTTATACACATTTTCATGCAATCATAAGTTTCTTTTTTGGCCAGCAAAAGTTAATTGTT
CTTAGATATAGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|18032022|gb|AAL40860.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|18032022|gb|AAL40860.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               661-807, gnl|bosTau2|chr11 (5424661-5424803)
               

               
               661-807, gnl|Hg17|chr11 (31767773-31767631)
               

               
               661-807, gnl|Mm7|chr2 (105547418-105547549)
               


               
               902-1112, gnl|bosTau2|chr4 (4351059-4351265)
               

               
               902-1112, gnl|Hg17|chr11 (31767532-31767327)
               

               
               902-1112, gnl|Mm7|chr2 (105547644-105547847)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               661-807, gnl|bosTau2|chr11 (5424661-5424803)
               

               
               661-807, gnl|Hg17|chr11 (31767773-31767631)
               

               
               661-807, gnl|Mm7|chr2 (105547418-105547549)
               


               
               902-1112, gnl|bosTau2|chr4 (4351059-4351265)
               

               
               902-1112, gnl|Hg17|chr11 (31767532-31767327)
               

               
               902-1112, gnl|Mm7|chr2 (105547644-105547847)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               ret (2.7034)
               

               
               eye (0.341006)
               

               
               fce (0.271592)
               

               
               ebs (0.118301)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (2.7034)
               

               
               eye (0.341006)
               

               
               fce (0.271592)
               

               
               ebs (0.118301)

	661-807, gnl\|bosTau2\|chr11 (5424661-5424803)
	661-807, gnl\|Hg17\|chr11 (31767773-31767631)
	661-807, gnl\|Mm7\|chr2 (105547418-105547549)

	902-1112, gnl\|bosTau2\|chr4 (4351059-4351265)
	902-1112, gnl\|Hg17\|chr11 (31767532-31767327)
	902-1112, gnl\|Mm7\|chr2 (105547644-105547847)