Non-Coding RNA Search

Ss1.1-rret34_n9.5

Sequence:


               
               AATCTGGTTGTTGTCACTTTCTTAGGAAAAAAAAAAAAAGAAAAAAAAAAAACTTTGCAG
TGAAACGTGTTACAGTATCATATCCGCCAGGCTGAAATCTGCATAAAGAAGTTCAGTTTG
TTTAAATGACATCAGCCAGGATCCTTAGTGTCATAGCAGAAACAAAAAAAGCAAAATAGG
GGGTAAATGGACTGGAGGGTGACTGTAAACCAAGAGAGATTTCTTAAGGAATTTGTGTAA
CAAATACAACATGTCTTTGGCACTTTTGTTGATGTTTCTTTCAGAGTGTTGTGTGAATCA
TTTCAACCAACAGGAATTTTTTGGTTGTGTTAAAAGTTCTTTTTATAATTTTTGAATGTA
TTTGTTTCAGCATTTTATTGGACTTTCCTAACCTGCGTTAACACCATTGAATGTGTATTT
CTTCAGAAAATACCACCCTCTTGTGCCCTTAAAGCATTACTTTAACTGATAGGGAACATG
AGACGTTTTTCAGTGCAGCTGTTCGTTAAAGAGTTAATTGAAGATGTGTATAAATGTCAC
GAAGAATAAAAATATATTGGCGTCTCTTTAGTATGGTTTCCAGTGCAATTAAACCAAGAA
ATGTCTTTTTTTAAAAAAAGAAATAGTATTTAATAGGTTTCTGACAATATGGATCGTTTT
GCACATAGCTTTATCAACTTTTAAACATTAATAAACTGATTTTTTTAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATCTGGTTGTTGTCACTTTCTTAGGAAAAAAAAAAAAAGAAAAAAAAAAAACTTTGCAG
TGAAACGTGTTACAGTATCATATCCGCCAGGCTGAAATCTGCATAAAGAAGTTCAGTTTG
TTTAAATGACATCAGCCAGGATCCTTAGTGTCATAGCAGAAACAAAAAAAGCAAAATAGG
GGGTAAATGGACTGGAGGGTGACTGTAAACCAAGAGAGATTTCTTAAGGAATTTGTGTAA
CAAATACAACATGTCTTTGGCACTTTTGTTGATGTTTCTTTCAGAGTGTTGTGTGAATCA
TTTCAACCAACAGGAATTTTTTGGTTGTGTTAAAAGTTCTTTTTATAATTTTTGAATGTA
TTTGTTTCAGCATTTTATTGGACTTTCCTAACCTGCGTTAACACCATTGAATGTGTATTT
CTTCAGAAAATACCACCCTCTTGTGCCCTTAAAGCATTACTTTAACTGATAGGGAACATG
AGACGTTTTTCAGTGCAGCTGTTCGTTAAAGAGTTAATTGAAGATGTGTATAAATGTCAC
GAAGAATAAAAATATATTGGCGTCTCTTTAGTATGGTTTCCAGTGCAATTAAACCAAGAA
ATGTCTTTTTTTAAAAAAAGAAATAGTATTTAATAGGTTTCTGACAATATGGATCGTTTT
GCACATAGCTTTATCAACTTTTAAACATTAATAAACTGATTTTTTTAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               32-708, gnl|bosTau2|chr3 (34158213-34158901)
               

               
               32-708, gnl|Hg17|chr1 (101418404-101419093)
               

               
               32-708, gnl|Mm7|chr3 (115486075-115485348)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               32-708, gnl|bosTau2|chr3 (34158213-34158901)
               

               
               32-708, gnl|Hg17|chr1 (101418404-101419093)
               

               
               32-708, gnl|Mm7|chr3 (115486075-115485348)

Expressed library(ies): 16 entry(ies)

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Expressed library(ies): 16 entry(ies)

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               fco (0.628832)
               

               
               spc (0.566829)
               

               
               ret (0.514933)
               

               
               isp (0.451128)
               

               
               fcc (0.39557)
               

               
               hyp (0.285673)
               

               
               tra (0.246184)
               

               
               hea (0.204499)
               

               
               fbs (0.175346)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               thg (0.126791)
               

               
               ldo (0.0970026)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.628832)
               

               
               spc (0.566829)
               

               
               ret (0.514933)
               

               
               isp (0.451128)
               

               
               fcc (0.39557)
               

               
               hyp (0.285673)
               

               
               tra (0.246184)
               

               
               hea (0.204499)
               

               
               fbs (0.175346)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               thg (0.126791)
               

               
               ldo (0.0970026)

	32-708, gnl\|bosTau2\|chr3 (34158213-34158901)
	32-708, gnl\|Hg17\|chr1 (101418404-101419093)
	32-708, gnl\|Mm7\|chr3 (115486075-115485348)

	fco (0.628832)
	spc (0.566829)
	ret (0.514933)
	isp (0.451128)
	fcc (0.39557)
	hyp (0.285673)
	tra (0.246184)
	hea (0.204499)
	fbs (0.175346)
	bfe (0.149858)
	fat (0.147427)
	ski (0.146735)
	pty (0.142714)
	lnt (0.142308)
	thg (0.126791)
	ldo (0.0970026)