Non-Coding RNA Search

Ss1.1-rret34_o23.5

Sequence:


               
               TGGAGCAGGTGAGCGGCATCATTGGAAACCTCCGTCACATGGCCCTGGATATGGGCAATG
AGATCGATACACAGAACCGCCAGATCGACAGGATCATGGAGAAGGCTGATTCCAACAAAA
CCAGAATTGATGAGGCCAACCAACGTGCAACAAAGATGCTGGGGAGTGGTTAAGTGTGCC
CACCTGTGTTCTCTTGCAAATGCTGTCCAGCAAGATAGCACCTTCATGCTTTTCTCATGG
TATTATCTAGTAGGTTTGCACACACGCACACATCAATCTGCCCCCATTGTGAATGTTGTC
TTGTGTTGTCCATCGGCCCAACAATACTATGTGTCTTTTGTTCTTTCTGGGTCTCTTTCT
TTCCAAAGGCTGTATATAGTGGTCATTTGGTGGCTCTAACTCCCTACAAAAGATGTCTTG
GGTTTCATTTTTTCCTTTCCTCTCCTCAGTGGCGTTTGCTGAATGACAACAATTTAGGAA
TGCTCAATGTGCTGTTGATTCTTTCAATACGCAGTATTGTTCTTGTAAAACTGTGACATT
CCACAGAGCTACTGCCACGGTCCTTTCTTTGGGTGTCAGGCTCTGAAACTCTCAAAATTT
GCTGTCTTTGGTTCCTCATGGCTATCATCTGTCTTTATGATTTCATGATTAGACAATGTG
GAATTACCTAACAAGCATTGCACTAAAAGTGATGTGATTTATGCATGAGAACTAAATAGA
TTTTTAGATTCCTACTTAAACAAAATCTTTCCATGACAGTAGCATACTGATGAGAAAACA
CACATGCACCAACAGCAAAACAACAACAAAGCATGCTCAGTATTGAGACACTGTCAAGAT
TAAGTTATACCAGCAAAACTGCAGTAGTGTCACTTTCTTTCTGTCAATATTTAGACTTAT
TAACCATGATCATCCTTTTTTTAAAAAAAAAGAATTTTAAAAAAAGTTGGGTTTGACACA
CTCACCACTTAATCATTTCCAGCAAAATATATGTTTGGCTGAAACTATGTCAGATGGATG
TAAAATAGGGTTTGTTTGCTGCTTTCGAAGGCTGTGTTTTGGAGAAAGCAACCTTGCTAT
GAAACAGTGTGGAGATGTAAATTTAGTAAGGCTGACTCTTATTAATCACCATTTCCCCTG
TGGTTTGTTATCAGTAATTCTCTGTTGCTTAATCTAGAGCTATGCACACCAAATTGCTGA
GATGTTTAGTAGCTGATAAAGAAACCTTTAAAAAATAATATAAACGAATGAACTATAGAT
AAACTGTGCGATAAATATCATTACAGCATGTAATATTAAATTCCTCCTGTTTCCTCTGTC
CGTTTGTGATGTGATTGACATTTTGTAGCTAGTTTAAAAATTATTAAAAATTATAGACCC
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGAGCAGGTGAGCGGCATCATTGGAAACCTCCGTCACATGGCCCTGGATATGGGCAATG
AGATCGATACACAGAACCGCCAGATCGACAGGATCATGGAGAAGGCTGATTCCAACAAAA
CCAGAATTGATGAGGCCAACCAACGTGCAACAAAGATGCTGGGGAGTGGTTAAGTGTGCC
CACCTGTGTTCTCTTGCAAATGCTGTCCAGCAAGATAGCACCTTCATGCTTTTCTCATGG
TATTATCTAGTAGGTTTGCACACACGCACACATCAATCTGCCCCCATTGTGAATGTTGTC
TTGTGTTGTCCATCGGCCCAACAATACTATGTGTCTTTTGTTCTTTCTGGGTCTCTTTCT
TTCCAAAGGCTGTATATAGTGGTCATTTGGTGGCTCTAACTCCCTACAAAAGATGTCTTG
GGTTTCATTTTTTCCTTTCCTCTCCTCAGTGGCGTTTGCTGAATGACAACAATTTAGGAA
TGCTCAATGTGCTGTTGATTCTTTCAATACGCAGTATTGTTCTTGTAAAACTGTGACATT
CCACAGAGCTACTGCCACGGTCCTTTCTTTGGGTGTCAGGCTCTGAAACTCTCAAAATTT
GCTGTCTTTGGTTCCTCATGGCTATCATCTGTCTTTATGATTTCATGATTAGACAATGTG
GAATTACCTAACAAGCATTGCACTAAAAGTGATGTGATTTATGCATGAGAACTAAATAGA
TTTTTAGATTCCTACTTAAACAAAATCTTTCCATGACAGTAGCATACTGATGAGAAAACA
CACATGCACCAACAGCAAAACAACAACAAAGCATGCTCAGTATTGAGACACTGTCAAGAT
TAAGTTATACCAGCAAAACTGCAGTAGTGTCACTTTCTTTCTGTCAATATTTAGACTTAT
TAACCATGATCATCCTTTTTTTAAAAAAAAAGAATTTTAAAAAAAGTTGGGTTTGACACA
CTCACCACTTAATCATTTCCAGCAAAATATATGTTTGGCTGAAACTATGTCAGATGGATG
TAAAATAGGGTTTGTTTGCTGCTTTCGAAGGCTGTGTTTTGGAGAAAGCAACCTTGCTAT
GAAACAGTGTGGAGATGTAAATTTAGTAAGGCTGACTCTTATTAATCACCATTTCCCCTG
TGGTTTGTTATCAGTAATTCTCTGTTGCTTAATCTAGAGCTATGCACACCAAATTGCTGA
GATGTTTAGTAGCTGATAAAGAAACCTTTAAAAAATAATATAAACGAATGAACTATAGAT
AAACTGTGCGATAAATATCATTACAGCATGTAATATTAAATTCCTCCTGTTTCCTCTGTC
CGTTTGTGATGTGATTGACATTTTGTAGCTAGTTTAAAAATTATTAAAAATTATAGACCC
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61679550|pdb|1XTG|B

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61679550|pdb|1XTG|B

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               449-568, - strand, RNAz p=0.961061
               

               
               609-785, + strand, RNAz p=0.856633

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               449-568, - strand, RNAz p=0.961061
               

               
               609-785, + strand, RNAz p=0.856633

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_130811, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_130811, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               103-1382, gnl|bosTau2|chr13 (1743559-1742268)
               

               
               103-1382, gnl|Hg17|chr20 (10234775-10236066)
               

               
               103-1382, gnl|Mm7|chr2 (136521926-136523273)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               103-1382, gnl|bosTau2|chr13 (1743559-1742268)
               

               
               103-1382, gnl|Hg17|chr20 (10234775-10236066)
               

               
               103-1382, gnl|Mm7|chr2 (136521926-136523273)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               fco (16.5068)
               

               
               ret (4.89186)
               

               
               cbe (3.11005)
               

               
               fhi (1.35662)
               

               
               sug (0.891039)
               

               
               fcc (0.791139)
               

               
               ebs (0.709807)
               

               
               ece (0.687916)
               

               
               fce (0.543183)
               

               
               fbs (0.526039)
               

               
               spc (0.340097)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               cbr (0.127975)
               

               
               ecc (0.115035)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (16.5068)
               

               
               ret (4.89186)
               

               
               cbe (3.11005)
               

               
               fhi (1.35662)
               

               
               sug (0.891039)
               

               
               fcc (0.791139)
               

               
               ebs (0.709807)
               

               
               ece (0.687916)
               

               
               fce (0.543183)
               

               
               fbs (0.526039)
               

               
               spc (0.340097)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               cbr (0.127975)
               

               
               ecc (0.115035)

	449-568, - strand, RNAz p=0.961061
	609-785, + strand, RNAz p=0.856633

	103-1382, gnl\|bosTau2\|chr13 (1743559-1742268)
	103-1382, gnl\|Hg17\|chr20 (10234775-10236066)
	103-1382, gnl\|Mm7\|chr2 (136521926-136523273)

	fco (16.5068)
	ret (4.89186)
	cbe (3.11005)
	fhi (1.35662)
	sug (0.891039)
	fcc (0.791139)
	ebs (0.709807)
	ece (0.687916)
	fce (0.543183)
	fbs (0.526039)
	spc (0.340097)
	lin (0.145603)
	hyp (0.142837)
	cbr (0.127975)
	ecc (0.115035)