Non-Coding RNA Search

Ss1.1-rret34_o9.5

Sequence:


               
               CACAGGTTTCAGTGCCTTTCTTGTGTTATGAAAGGCAGGTAGATGTTATAGCCATAGATA
AAATTCATAGGTGAATTGCACACTGACCTTAAATCTCCCTCTATATGCCCTTGTGTCTTG
CATGTTAAAAGCTGGATTATTGGGCAGATGTTGCAGCCTGCCCTACTACATGTTAGACAA
TTGTGCATTAGTACATAACCAGAAGTTCTTCGCTCTTTAAAATGTTTTTGACAGATCATC
TCATCATAAAAATATAAATAATTCAGAAAAACTGTAGGGAAAAGAATTACGTTTTACGAA
AGATGTTTCAAAGTCTTCCTAGAACTTAGATAGAGCCTAATGGTTATTTTGTATCTAACT
GATACATTTCATGTTAATTTCTTACTACCACCATACATTTTATTAAGCAAAATTATATAG
CATGTGACTTGGCTTTCAGGGTTCTCAAAACATTTTTACTCTTTTGTTGCATGTACTGTA
TGTTTAGAGACAACCAGTTATATACTCAGTATGGTTTTACTGTGCCTTACACAAAGAGAA
AAACTATACAGAATGTATATCATGGGGTGGGGTAACAGAGTCTTTACTGCACTGTTAGGT
GATGGCACACGGAGCATGTCCCAGAACATTTCTGTGCTTAAATTACCCAACCAAAGAGAT
CTAAAGTATGTATGTTGTACTGTAATAGGGGTTTATGCCTGGACATTTAAGTGTTTTATT
TGTTTTCTGAAATGATGTGAACTTATTTTTCTAAACACTATGCTAAATAAACTTTATATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACAGGTTTCAGTGCCTTTCTTGTGTTATGAAAGGCAGGTAGATGTTATAGCCATAGATA
AAATTCATAGGTGAATTGCACACTGACCTTAAATCTCCCTCTATATGCCCTTGTGTCTTG
CATGTTAAAAGCTGGATTATTGGGCAGATGTTGCAGCCTGCCCTACTACATGTTAGACAA
TTGTGCATTAGTACATAACCAGAAGTTCTTCGCTCTTTAAAATGTTTTTGACAGATCATC
TCATCATAAAAATATAAATAATTCAGAAAAACTGTAGGGAAAAGAATTACGTTTTACGAA
AGATGTTTCAAAGTCTTCCTAGAACTTAGATAGAGCCTAATGGTTATTTTGTATCTAACT
GATACATTTCATGTTAATTTCTTACTACCACCATACATTTTATTAAGCAAAATTATATAG
CATGTGACTTGGCTTTCAGGGTTCTCAAAACATTTTTACTCTTTTGTTGCATGTACTGTA
TGTTTAGAGACAACCAGTTATATACTCAGTATGGTTTTACTGTGCCTTACACAAAGAGAA
AAACTATACAGAATGTATATCATGGGGTGGGGTAACAGAGTCTTTACTGCACTGTTAGGT
GATGGCACACGGAGCATGTCCCAGAACATTTCTGTGCTTAAATTACCCAACCAAAGAGAT
CTAAAGTATGTATGTTGTACTGTAATAGGGGTTTATGCCTGGACATTTAAGTGTTTTATT
TGTTTTCTGAAATGATGTGAACTTATTTTTCTAAACACTATGCTAAATAAACTTTATATT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               6-195, + strand, RNAz p=0.594491

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               6-195, + strand, RNAz p=0.594491

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_017420, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_017420, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               6-780, gnl|bosTau2|chr10 (49544680-49545455)
               

               
               6-780, gnl|Hg17|chr14 (60246780-60246018)
               

               
               6-780, gnl|Mm7|chr12 (71050942-71050161)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-780, gnl|bosTau2|chr10 (49544680-49545455)
               

               
               6-780, gnl|Hg17|chr14 (60246780-60246018)
               

               
               6-780, gnl|Mm7|chr12 (71050942-71050161)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               pro (0.512033)
               

               
               ret (0.3862)
               

               
               sag (0.36543)
               

               
               cmu (0.186393)
               

               
               tra (0.123092)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               ret (0.3862)
               

               
               sag (0.36543)
               

               
               cmu (0.186393)
               

               
               tra (0.123092)

	6-780, gnl\|bosTau2\|chr10 (49544680-49545455)
	6-780, gnl\|Hg17\|chr14 (60246780-60246018)
	6-780, gnl\|Mm7\|chr12 (71050942-71050161)

	pro (0.512033)
	ret (0.3862)
	sag (0.36543)
	cmu (0.186393)
	tra (0.123092)