Non-Coding RNA Search

Ss1.1-rret35_a11.5

Sequence:


               
               GTAGTAATTTAAAATATAAGAATAAAAATTTTATTTGTCCACAGTTGGATATATGTTGGA
TAAATGTTTTTTCTCAAAAATCACAGAACTTTTGTCTTTCATTTTTGCCTGTTTTGTAAT
TTACTAATTATAAAAGTTCTGGCTACATTTATGGAATTTAATGTTAATCAGCTATATGTA
TTCCTTTATGGATCCAGAAGGAAGTATTTTACGTAACATGTTTCATAATATTTAACCATT
TACAAAGATGTACCTGCACTGAGTTTTTCTCCTTTTCATTAGATTGTGGTAAATTTTTCT
TATTGGGATAATTATGGAGTACTTATATGTGAAGGGAGCCTGTGACATTTTACTCTGGCT
AAAATATTGAGATTAAATGCAGTTACTTTTACCATTCTTCTCAAATATAGCTGTCAAATA
ATTACCAAATTAATTCAAGAATATAGAACAAAGGTAACAAGCAGCATAGTTTCCTAAGAA
TTCACTAGAATTTAAGGAATCGGCTCTTGCACTGCCCATCTTTGCAGTTTTGAAAAATAA
ATAGCTTAGCTGAGAAGTAATATTCTAAAGCTGCTGAAGTGTGAATCAGATAATGAGATG
AAGAGTAAGTTAATTGGCTATTCCAGGGTTAAGAATAATATTTTAAATTATTTATGTTCC
TGATTAGTATAAAAATGTACTCATCATAAAATTTGGGGCAAGATACACATAAACTTCAAA
GAGTAAATGATAAATGTATAGATTCAGTAGCTCAGGATTATATGTACCTTTGAAAATCCA
TTAATAAAGATTATTGTTCAAAAATTACCTTGTTCTATTCTATTTTAAAAATATAAGAGG
TCTGTCCAAAATTGCCTAGAGGTCTTACTATAATGTTTTCATGTTTACGAGTGTATATGA
TATTCCTTTATATAATACTCACTTATGATTTTCCCAATTTTCATGCCATTATTCTAAAAA
TATTTTAATAAATTTTTAATACACTTGCTGTTAAGTATGAATAACTTAACTAGATAAGAA
TCTAATTTATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTAGTAATTTAAAATATAAGAATAAAAATTTTATTTGTCCACAGTTGGATATATGTTGGA
TAAATGTTTTTTCTCAAAAATCACAGAACTTTTGTCTTTCATTTTTGCCTGTTTTGTAAT
TTACTAATTATAAAAGTTCTGGCTACATTTATGGAATTTAATGTTAATCAGCTATATGTA
TTCCTTTATGGATCCAGAAGGAAGTATTTTACGTAACATGTTTCATAATATTTAACCATT
TACAAAGATGTACCTGCACTGAGTTTTTCTCCTTTTCATTAGATTGTGGTAAATTTTTCT
TATTGGGATAATTATGGAGTACTTATATGTGAAGGGAGCCTGTGACATTTTACTCTGGCT
AAAATATTGAGATTAAATGCAGTTACTTTTACCATTCTTCTCAAATATAGCTGTCAAATA
ATTACCAAATTAATTCAAGAATATAGAACAAAGGTAACAAGCAGCATAGTTTCCTAAGAA
TTCACTAGAATTTAAGGAATCGGCTCTTGCACTGCCCATCTTTGCAGTTTTGAAAAATAA
ATAGCTTAGCTGAGAAGTAATATTCTAAAGCTGCTGAAGTGTGAATCAGATAATGAGATG
AAGAGTAAGTTAATTGGCTATTCCAGGGTTAAGAATAATATTTTAAATTATTTATGTTCC
TGATTAGTATAAAAATGTACTCATCATAAAATTTGGGGCAAGATACACATAAACTTCAAA
GAGTAAATGATAAATGTATAGATTCAGTAGCTCAGGATTATATGTACCTTTGAAAATCCA
TTAATAAAGATTATTGTTCAAAAATTACCTTGTTCTATTCTATTTTAAAAATATAAGAGG
TCTGTCCAAAATTGCCTAGAGGTCTTACTATAATGTTTTCATGTTTACGAGTGTATATGA
TATTCCTTTATATAATACTCACTTATGATTTTCCCAATTTTCATGCCATTATTCTAAAAA
TATTTTAATAAATTTTTAATACACTTGCTGTTAAGTATGAATAACTTAACTAGATAAGAA
TCTAATTTATTT

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               2-307, gnl|bosTau2|chr14 (45579812-45580121)
               

               
               2-307, gnl|Hg17|chr8 (92076470-92076170)
               

               
               2-307, gnl|Mm7|chr4 (14841632-14841933)
               


               
               314-987, gnl|bosTau2|chr14 (45580507-45581188)
               

               
               314-987, gnl|Hg17|chr8 (92076163-92075502)
               

               
               314-987, gnl|Mm7|chr4 (14841955-14842594)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-307, gnl|bosTau2|chr14 (45579812-45580121)
               

               
               2-307, gnl|Hg17|chr8 (92076470-92076170)
               

               
               2-307, gnl|Mm7|chr4 (14841632-14841933)
               


               
               314-987, gnl|bosTau2|chr14 (45580507-45581188)
               

               
               314-987, gnl|Hg17|chr8 (92076163-92075502)
               

               
               314-987, gnl|Mm7|chr4 (14841955-14842594)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fbs (0.175346)
               

               
               ret (0.128733)
               

               
               pgl (0.118483)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)
               

               
               ret (0.128733)
               

               
               pgl (0.118483)

	2-307, gnl\|bosTau2\|chr14 (45579812-45580121)
	2-307, gnl\|Hg17\|chr8 (92076470-92076170)
	2-307, gnl\|Mm7\|chr4 (14841632-14841933)

	314-987, gnl\|bosTau2\|chr14 (45580507-45581188)
	314-987, gnl\|Hg17\|chr8 (92076163-92075502)
	314-987, gnl\|Mm7\|chr4 (14841955-14842594)