Non-Coding RNA Search

Ss1.1-rret35_a17.5

Sequence:


               
               TTGTATTTGCTAACACAGTATGAGTTTTTCTGGTTGTTTTCAAGACTGTTGTACTGGTAT
CTATGTTTGTGTACATGCAAACACACATGTCTAAGTTTCAATTACTAACAGCAGAGCAGA
ACTGGTTTTATTTCTCAAATAGCTGATTATTCTCCTAACTCTGAACTAAGAAGCCTGATC
ATTTCTATTTCTAAGCCAAAAAATCCTGGTGTTTTTTCCATTGAAAAATAAGCCTTATTT
TCATAAGGCATACTTAAAGGATTTCCAGCTTCTGATATTTGATTTTGAACTCTTCAGCCT
GTATTAATATTATAAAACTTTCTGTCTCTGCATGTAATCATACTAATTTAGTTATGCCAT
AAACAAAACAGTGAGAAAGACTTTATACAACTTTGCAACATGAATATAATAAGTTTCAGT
ATTTTGAAAACAAAAACTAATCCTGTTAAATAAAAACTTATTTTGTTAAGTTGAAATTCG
AGGATATATATATATAATTGCTTAATTGTAACAGTGCATTAAGTCAAATACAAAAATTGA
TTTTTCTTAAATGCATAATTATTTATTGCCATGACAAATTATTTGGTCCATAATGAAAGC
TATATTCAGATTGAGATTTGCCCTTAAGTTGGAGAGGTAATTAATGAAATGTCTGTGCAA
AATAAAGTGCAAGCAGTGTAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGTATTTGCTAACACAGTATGAGTTTTTCTGGTTGTTTTCAAGACTGTTGTACTGGTAT
CTATGTTTGTGTACATGCAAACACACATGTCTAAGTTTCAATTACTAACAGCAGAGCAGA
ACTGGTTTTATTTCTCAAATAGCTGATTATTCTCCTAACTCTGAACTAAGAAGCCTGATC
ATTTCTATTTCTAAGCCAAAAAATCCTGGTGTTTTTTCCATTGAAAAATAAGCCTTATTT
TCATAAGGCATACTTAAAGGATTTCCAGCTTCTGATATTTGATTTTGAACTCTTCAGCCT
GTATTAATATTATAAAACTTTCTGTCTCTGCATGTAATCATACTAATTTAGTTATGCCAT
AAACAAAACAGTGAGAAAGACTTTATACAACTTTGCAACATGAATATAATAAGTTTCAGT
ATTTTGAAAACAAAAACTAATCCTGTTAAATAAAAACTTATTTTGTTAAGTTGAAATTCG
AGGATATATATATATAATTGCTTAATTGTAACAGTGCATTAAGTCAAATACAAAAATTGA
TTTTTCTTAAATGCATAATTATTTATTGCCATGACAAATTATTTGGTCCATAATGAAAGC
TATATTCAGATTGAGATTTGCCCTTAAGTTGGAGAGGTAATTAATGAAATGTCTGTGCAA
AATAAAGTGCAAGCAGTGTAAAAAAAAAAAAAAAAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               1-683, gnl|bosTau2|chr20 (8769399-8768729)
               

               
               1-683, gnl|Hg17|chr5 (64996969-64997652)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-683, gnl|bosTau2|chr20 (8769399-8768729)
               

               
               1-683, gnl|Hg17|chr5 (64996969-64997652)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               cbe (0.478469)
               

               
               eye (0.170503)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               lin (0.145603)
               

               
               ret (0.128733)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.478469)
               

               
               eye (0.170503)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               lin (0.145603)
               

               
               ret (0.128733)

	1-683, gnl\|bosTau2\|chr20 (8769399-8768729)
	1-683, gnl\|Hg17\|chr5 (64996969-64997652)

	cbe (0.478469)
	eye (0.170503)
	mga (0.160205)
	fco (0.157208)
	lin (0.145603)
	ret (0.128733)