Non-Coding RNA Search

Ss1.1-rret35_d13.5

Sequence:


               
               GTGGCGTTAGCATTTTAAGACGCATAGCTGACATTTTCCAAAATGTAGTTGATGTATCCA
GTGGGCCAGGACTGGCCCAGATTAAAAATTGGATTTCTTGATTCTCCAGATTTTTAATAT
GTAGGCACCGACCTGATTTGCATATTCATCCATGGACCACTGTTTCTTGCTTGTACCTCT
GGCTGACTAAATTTGGGGACAGATTCAGTCTTGCCTTACACAAAGGGGATCATAAAGTTA
GAATCTATTTTCTATGTACTAGTATTGTGTACTGTATAGACAGTTTGTAAATGTTATTTC
TGCAAACACCTTCTTATGATAATTATATATATTATATATATATATACATATATATATATC
AGTTTGACCACACTGTTTTAGAGTCTTAATGCCAAGTCAGCAGATTTGCTTTATGAATTA
CAGGGACTAGAAACGCCCACCTTCAGGAAATTTGTAATACCATCGTCCAGACACCTATCC
CCGTTCTAGGAGAAAGTCTGTACATACTGTAAATACGTGTGACTGCTTGACTTGAACAGG
CTGATTTCTGAATGTTTTCCCATCCTTGTAAGTCAACGATTTTGACCGTAAATGATGGTA
AATATAATCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGGCGTTAGCATTTTAAGACGCATAGCTGACATTTTCCAAAATGTAGTTGATGTATCCA
GTGGGCCAGGACTGGCCCAGATTAAAAATTGGATTTCTTGATTCTCCAGATTTTTAATAT
GTAGGCACCGACCTGATTTGCATATTCATCCATGGACCACTGTTTCTTGCTTGTACCTCT
GGCTGACTAAATTTGGGGACAGATTCAGTCTTGCCTTACACAAAGGGGATCATAAAGTTA
GAATCTATTTTCTATGTACTAGTATTGTGTACTGTATAGACAGTTTGTAAATGTTATTTC
TGCAAACACCTTCTTATGATAATTATATATATTATATATATATATACATATATATATATC
AGTTTGACCACACTGTTTTAGAGTCTTAATGCCAAGTCAGCAGATTTGCTTTATGAATTA
CAGGGACTAGAAACGCCCACCTTCAGGAAATTTGTAATACCATCGTCCAGACACCTATCC
CCGTTCTAGGAGAAAGTCTGTACATACTGTAAATACGTGTGACTGCTTGACTTGAACAGG
CTGATTTCTGAATGTTTTCCCATCCTTGTAAGTCAACGATTTTGACCGTAAATGATGGTA
AATATAATCAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               231-325, + strand, RNAz p=0.735358

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               231-325, + strand, RNAz p=0.735358

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_201570, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_201570, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-606, gnl|bosTau2|chr13 (20589094-20588495)
               

               
               1-606, gnl|Hg17|chr10 (18868955-18869534)
               

               
               1-606, gnl|Mm7|chr2 (14935741-14936349)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-606, gnl|bosTau2|chr13 (20589094-20588495)
               

               
               1-606, gnl|Hg17|chr10 (18868955-18869534)
               

               
               1-606, gnl|Mm7|chr2 (14935741-14936349)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               sug (0.254582)
               

               
               fcc (0.197785)
               

               
               ret (0.128733)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sug (0.254582)
               

               
               fcc (0.197785)
               

               
               ret (0.128733)

	1-606, gnl\|bosTau2\|chr13 (20589094-20588495)
	1-606, gnl\|Hg17\|chr10 (18868955-18869534)
	1-606, gnl\|Mm7\|chr2 (14935741-14936349)