Non-Coding RNA Search

Ss1.1-rret35_g13.5

Sequence:


               
               CCTTCATCATCTGTGGCACCTTGTACACCGTCAGCAGCTATTCATCACCTGAGGCTACCA
TCAACTTCGCCTACGACACAAGCACGGGCAGCAGCAAGGCCCTGACCATCCCGTTCAAGA
ACCGCTACGAGTACAGCAGCATGATAGACTACAACCCCCTGGAGAAGAAGCTCTTCGCCT
GGGACAACTTCAACATGGTCACCTATGACATCAGGCTCTCCCGGATGTGAAAAGCCACCA
AGCGCTGTCAAAAAAGGCAGAAGGGGATGATGGTCCGGGCTCCTGAGGGGAGAGCCAGCC
AGCAACACCCACAGAGCTTTTCTCTTTTCAAGCTTGCACTCACCCTGGAGAATGTGCATG
GTCACCACGTCCCACTGGGTGGGAAGAGCAAGCTGGGGTTTCCCATCATAACAGATGCTT
TTCTTCTGTCAGCTTTTAAAGGGATATGTAACCAAGATAGTTTGAGTTTTTTGGTGATTT
GAGGCAAACGCATAATGAGTAATAGTTTCTTCCTGAAAACCACAATACTGGCCCTCACTG
GCTAAAGAGGATAGGTTTAGAAAAGAACTTGGGAAAAACAGGTTTGCCCCATGTGGAACC
CAGGGCCAGCCCCTGCACTCACATGTTGCCGGGTTGCTGTGAGCTACAATAACAGCAGCA
CTTCTGAAGGAAGAGAAGGGCCTCTGGCGCCAGAGCTGAACATACGTGTGTTTACTATGG
TTGGCTTTTAATGCTTCAGGTGGAATCCAGTTGGCTATGACAGAACCTTTGCCTCGTAAA
ATAAAATAATCTTACATAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTTCATCATCTGTGGCACCTTGTACACCGTCAGCAGCTATTCATCACCTGAGGCTACCA
TCAACTTCGCCTACGACACAAGCACGGGCAGCAGCAAGGCCCTGACCATCCCGTTCAAGA
ACCGCTACGAGTACAGCAGCATGATAGACTACAACCCCCTGGAGAAGAAGCTCTTCGCCT
GGGACAACTTCAACATGGTCACCTATGACATCAGGCTCTCCCGGATGTGAAAAGCCACCA
AGCGCTGTCAAAAAAGGCAGAAGGGGATGATGGTCCGGGCTCCTGAGGGGAGAGCCAGCC
AGCAACACCCACAGAGCTTTTCTCTTTTCAAGCTTGCACTCACCCTGGAGAATGTGCATG
GTCACCACGTCCCACTGGGTGGGAAGAGCAAGCTGGGGTTTCCCATCATAACAGATGCTT
TTCTTCTGTCAGCTTTTAAAGGGATATGTAACCAAGATAGTTTGAGTTTTTTGGTGATTT
GAGGCAAACGCATAATGAGTAATAGTTTCTTCCTGAAAACCACAATACTGGCCCTCACTG
GCTAAAGAGGATAGGTTTAGAAAAGAACTTGGGAAAAACAGGTTTGCCCCATGTGGAACC
CAGGGCCAGCCCCTGCACTCACATGTTGCCGGGTTGCTGTGAGCTACAATAACAGCAGCA
CTTCTGAAGGAAGAGAAGGGCCTCTGGCGCCAGAGCTGAACATACGTGTGTTTACTATGG
TTGGCTTTTAATGCTTCAGGTGGAATCCAGTTGGCTATGACAGAACCTTTGCCTCGTAAA
ATAAAATAATCTTACATAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-799, gnl|bosTau2|chr16 (27674206-27673380)
               

               
               1-799, gnl|Hg17|chr1 (168336951-168336214)
               

               
               1-799, gnl|Mm7|chr1 (162610199-162610921)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-799, gnl|bosTau2|chr16 (27674206-27673380)
               

               
               1-799, gnl|Hg17|chr1 (168336951-168336214)
               

               
               1-799, gnl|Mm7|chr1 (162610199-162610921)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

Help | Less info


               
               fat (1.32685)
               

               
               tra (0.61546)
               

               
               tbr (0.308356)
               

               
               ret (0.257467)
               

               
               clu (0.239292)
               

               
               sag (0.182715)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               jca (0.11396)
               

               
               spc (0.113366)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (1.32685)
               

               
               tra (0.61546)
               

               
               tbr (0.308356)
               

               
               ret (0.257467)
               

               
               clu (0.239292)
               

               
               sag (0.182715)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               jca (0.11396)
               

               
               spc (0.113366)

	1-799, gnl\|bosTau2\|chr16 (27674206-27673380)
	1-799, gnl\|Hg17\|chr1 (168336951-168336214)
	1-799, gnl\|Mm7\|chr1 (162610199-162610921)

	fat (1.32685)
	tra (0.61546)
	tbr (0.308356)
	ret (0.257467)
	clu (0.239292)
	sag (0.182715)
	ssp (0.13552)
	ste (0.135208)
	jca (0.11396)
	spc (0.113366)