Non-Coding RNA Search

Ss1.1-rret35_i20.5

Sequence:


               
               ATCATTTATAAAGTTTATCAGGAAAATTCCCACCCCCTTCACATCATTTGGGCCAGGCCT
ATGGAATGCTAATAAATCTATAATCATTTATTAAGTTTATCAAGAAAATGCCGACCCAGT
TCACATCACATGGACCAGGCCTGTGGAATTCTTTTTGTAAATTACTTACTATGACCCCAT
GCAGTTCGGTGCCTAATAAATGCTTTTTAATGATGAACATTTCTATGATGCCTCCTAAAG
AGACCATAGTCTGATTTTTCTCACATTAAAATAACTGAAGTCACTTGTGAAACTGTTATA
CTTTGCTGCATTTTAATTAACCTTTGACAACTATTAAAATGGAATGTAAGTTAAATTTTG
AAGGAAAGGAAATAAATGTTTTCCATTTTTCGCCTTGATTTACTTTCTGTATGAGAGCAG
CTGTGTTTTTGATAGGTTTATGGTTTGCATGAATTAATATTTAAAGTGGTCTAGGCCAAT
GCATGGCTATTGCTGTAAATCTTGATGTTTATTTCTGCCTTATAAAATTCTATCATGGCC
TACCTGGAATTTAATATTCAGTGGACAAATTTATTAGTCCTCTGCACAACTTTTTTTTCA
GTAAGTAAATTATTTTACAAACAAATTTGAACTAATTTAATTGAAACTTTTGTTTAGCTT
GCCTCAAAGAACTTTTCTTATTAAAGCTCACAAAAATTCTCAGCAAATAAATCTCCCTTA
AGTAGGAAAAAAGCTAGATTTCATACTTGCCTACTTTGAATTAACAGCAACTTTCCATAG
GTAAATCTGCTCTTGCAAGGATGTGAGCAGAATATTAAAATATATATTTTTTTATGTTTC
ATGGTTCTAGACTAGAAGCCATAAATGAAGTTAATAATGTTTGTTGTTTGTTTTACTACT
TCAAGCTTCATTTTTCACATTTTCAAGTTTATTAAGTTAAAAAAAAAAGCAGCCTTGGAA
GGCAGCTACTATGGAAAATTGCAGTTTGCATTAAAGATAAAATAGTATTTTCAGCTCCAT
GAAAAACCATTCCTGCTGAAACTGCTGTAGAAATTGTGAAGCTGCATGAGTGGAGAGTGT
TAAATCTGTGATTATAGTAGTTCTCTCAGGTTTGTTAATCTTGATGTTCAATGCACTGTG
TTTTATAAATAGTTATTAAAGTCGAGTAATATTCAATTCTATGCAGTGTTGTGTGTCATT
GGCCTTTTGTGAATGTGCATGTTTTAAACTGCAAATTTTAAATATTTTGTCCTCCGATTG
TTATTACAAATGAAATAAACTTTACCGTTACATAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCATTTATAAAGTTTATCAGGAAAATTCCCACCCCCTTCACATCATTTGGGCCAGGCCT
ATGGAATGCTAATAAATCTATAATCATTTATTAAGTTTATCAAGAAAATGCCGACCCAGT
TCACATCACATGGACCAGGCCTGTGGAATTCTTTTTGTAAATTACTTACTATGACCCCAT
GCAGTTCGGTGCCTAATAAATGCTTTTTAATGATGAACATTTCTATGATGCCTCCTAAAG
AGACCATAGTCTGATTTTTCTCACATTAAAATAACTGAAGTCACTTGTGAAACTGTTATA
CTTTGCTGCATTTTAATTAACCTTTGACAACTATTAAAATGGAATGTAAGTTAAATTTTG
AAGGAAAGGAAATAAATGTTTTCCATTTTTCGCCTTGATTTACTTTCTGTATGAGAGCAG
CTGTGTTTTTGATAGGTTTATGGTTTGCATGAATTAATATTTAAAGTGGTCTAGGCCAAT
GCATGGCTATTGCTGTAAATCTTGATGTTTATTTCTGCCTTATAAAATTCTATCATGGCC
TACCTGGAATTTAATATTCAGTGGACAAATTTATTAGTCCTCTGCACAACTTTTTTTTCA
GTAAGTAAATTATTTTACAAACAAATTTGAACTAATTTAATTGAAACTTTTGTTTAGCTT
GCCTCAAAGAACTTTTCTTATTAAAGCTCACAAAAATTCTCAGCAAATAAATCTCCCTTA
AGTAGGAAAAAAGCTAGATTTCATACTTGCCTACTTTGAATTAACAGCAACTTTCCATAG
GTAAATCTGCTCTTGCAAGGATGTGAGCAGAATATTAAAATATATATTTTTTTATGTTTC
ATGGTTCTAGACTAGAAGCCATAAATGAAGTTAATAATGTTTGTTGTTTGTTTTACTACT
TCAAGCTTCATTTTTCACATTTTCAAGTTTATTAAGTTAAAAAAAAAAGCAGCCTTGGAA
GGCAGCTACTATGGAAAATTGCAGTTTGCATTAAAGATAAAATAGTATTTTCAGCTCCAT
GAAAAACCATTCCTGCTGAAACTGCTGTAGAAATTGTGAAGCTGCATGAGTGGAGAGTGT
TAAATCTGTGATTATAGTAGTTCTCTCAGGTTTGTTAATCTTGATGTTCAATGCACTGTG
TTTTATAAATAGTTATTAAAGTCGAGTAATATTCAATTCTATGCAGTGTTGTGTGTCATT
GGCCTTTTGTGAATGTGCATGTTTTAAACTGCAAATTTTAAATATTTTGTCCTCCGATTG
TTATTACAAATGAAATAAACTTTACCGTTACATAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1048-1307, gnl|bosTau2|chr6 (413917-413666)
               

               
               1048-1307, gnl|Hg17|chr4 (42251549-42251319)
               

               
               1048-1307, gnl|Mm7|chr5 (66973913-66973659)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1048-1307, gnl|bosTau2|chr6 (413917-413666)
               

               
               1048-1307, gnl|Hg17|chr4 (42251549-42251319)
               

               
               1048-1307, gnl|Mm7|chr5 (66973913-66973659)

Expressed library(ies): 18 entry(ies)

More info

Expressed library(ies): 18 entry(ies)

Help | Less info


               
               fco (0.78604)
               

               
               ret (0.643666)
               

               
               fhi (0.339155)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               fty (0.17584)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.78604)
               

               
               ret (0.643666)
               

               
               fhi (0.339155)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               fty (0.17584)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

	1048-1307, gnl\|bosTau2\|chr6 (413917-413666)
	1048-1307, gnl\|Hg17\|chr4 (42251549-42251319)
	1048-1307, gnl\|Mm7\|chr5 (66973913-66973659)

	fco (0.78604)
	ret (0.643666)
	fhi (0.339155)
	ece (0.229305)
	fcc (0.197785)
	aor (0.195274)
	fty (0.17584)
	isp (0.150376)
	liv (0.146284)
	lin (0.145603)
	hyp (0.142837)
	pla (0.133672)
	thg (0.126791)
	tra (0.123092)
	eru (0.120048)
	spc (0.113366)
	cty (0.10408)
	jej (0.0989218)