Non-Coding RNA Search

Ss1.1-rret35_j20.5

Sequence:


               
               AGGCAGATGTCTAACTGAAAACAAAGGAATTCAGAAGTACAAAGGATGCTGTTTATCCAA
AATTTGCATGAGTATTTTTGTTCTATTAGGAATACACCAAACTATTTGTGATCATTTTTT
CCAGGAATCTGAGATACATGTATTCAGCATGTATAGATACCTATCTATTTATATCTGTTT
TGGCAATGCTTTTGTCTTTGTGTTAATTTTAATGAAAGATAGAGCCTTCCTGGTGTGCAT
TTTTTACAGTCATTCACGAGTGTCTTTAGAATTCCCTTTCTGTTAAACCAATCTAACTGT
CCTGTCACTATGGTTTTGTGTGATCGTTTGCAACCCACTGGAGAGCTCTGAGATGTGCTG
ATTTTGCAAACTGTTATTCAATAGAATTTGGAGTTAAGCAGCTGGACTTAGGGAGACCAT
CCTGAGGTCATTCCAAGTTTCTTCTAAAGACTATGAACATCCGAGAAGACAATGGATAAC
TGTCACTGTAGCAGAGAATGCAAATCACAAAAACATAAGCAGTGAGTGAGATTTTCACTT
TAGGGTTTCCAAAGAATAAACAATTGCATGTTTTATTTCCCTCACAGGCTTCACCAACGC
TTTTATTGAAAGAATTAATTTATGCCGATATGAGGATAATATTACCTCCCATAAAATTGC
TTTGAATTTTTGAACTTGTTTTCAGCACACAAAGTACTATTTAAAAAGTAGCTACAAAGG
AGTAATAGCATTTTATCAGGTTATAGAAACATTAGAAGGCACTTAAAAGAATCACATATG
TAACCTTGGTGTGCTGAAATGTTTGGGAACTGACCGTCCCCAGCGTCTAAAACTAGCTAG
AAAAATGGCTTTGCATGCATCCGCTCAGTAAACCGACAATCTTGGTTAATGCTTTGAAAG
AGCAGGCAAGAAGGTTTTATTGAAAAATATTAAGACCTGTGTGTGTTTGTCATAATTTGA
CGATCGTAGACTTAATTGAGTTAAATGTAAATAATTCGTCTGAAATGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGCAGATGTCTAACTGAAAACAAAGGAATTCAGAAGTACAAAGGATGCTGTTTATCCAA
AATTTGCATGAGTATTTTTGTTCTATTAGGAATACACCAAACTATTTGTGATCATTTTTT
CCAGGAATCTGAGATACATGTATTCAGCATGTATAGATACCTATCTATTTATATCTGTTT
TGGCAATGCTTTTGTCTTTGTGTTAATTTTAATGAAAGATAGAGCCTTCCTGGTGTGCAT
TTTTTACAGTCATTCACGAGTGTCTTTAGAATTCCCTTTCTGTTAAACCAATCTAACTGT
CCTGTCACTATGGTTTTGTGTGATCGTTTGCAACCCACTGGAGAGCTCTGAGATGTGCTG
ATTTTGCAAACTGTTATTCAATAGAATTTGGAGTTAAGCAGCTGGACTTAGGGAGACCAT
CCTGAGGTCATTCCAAGTTTCTTCTAAAGACTATGAACATCCGAGAAGACAATGGATAAC
TGTCACTGTAGCAGAGAATGCAAATCACAAAAACATAAGCAGTGAGTGAGATTTTCACTT
TAGGGTTTCCAAAGAATAAACAATTGCATGTTTTATTTCCCTCACAGGCTTCACCAACGC
TTTTATTGAAAGAATTAATTTATGCCGATATGAGGATAATATTACCTCCCATAAAATTGC
TTTGAATTTTTGAACTTGTTTTCAGCACACAAAGTACTATTTAAAAAGTAGCTACAAAGG
AGTAATAGCATTTTATCAGGTTATAGAAACATTAGAAGGCACTTAAAAGAATCACATATG
TAACCTTGGTGTGCTGAAATGTTTGGGAACTGACCGTCCCCAGCGTCTAAAACTAGCTAG
AAAAATGGCTTTGCATGCATCCGCTCAGTAAACCGACAATCTTGGTTAATGCTTTGAAAG
AGCAGGCAAGAAGGTTTTATTGAAAAATATTAAGACCTGTGTGTGTTTGTCATAATTTGA
CGATCGTAGACTTAATTGAGTTAAATGTAAATAATTCGTCTGAAATGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               134-251, + strand, RNAz p=0.987141

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               134-251, + strand, RNAz p=0.987141

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               134-1008, gnl|bosTau2|chr13 (21686140-21685257)
               

               
               134-1008, gnl|Hg17|chr10 (28141171-28140322)
               

               
               134-1008, gnl|Mm7|chr18 (7292073-7291240)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               134-1008, gnl|bosTau2|chr13 (21686140-21685257)
               

               
               134-1008, gnl|Hg17|chr10 (28141171-28140322)
               

               
               134-1008, gnl|Mm7|chr18 (7292073-7291240)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               tra (0.246184)
               

               
               fco (0.157208)
               

               
               ret (0.128733)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.246184)
               

               
               fco (0.157208)
               

               
               ret (0.128733)

	134-1008, gnl\|bosTau2\|chr13 (21686140-21685257)
	134-1008, gnl\|Hg17\|chr10 (28141171-28140322)
	134-1008, gnl\|Mm7\|chr18 (7292073-7291240)