Non-Coding RNA Search

Ss1.1-rret35_j8.5

Sequence:


               
               GGTGAATTGATGATGACATGATGAGATATTGTGGATGGTTTCCACATCCATAGGCTCAGG
ATGCTGGACAAAAAATAACTCTTACTGTCTATGCCTTCATATTGAGAAAGGAGAAATTTA
GTTTTAAACCTGAAAAAATATGACTATTTTGGTTGCTCACTGTAAGTACTGAAAAAGAGT
GATGGCTTTGAAGTTTTAGATAAAAAATTACGGAGAATGTAATTATTATTGATATTTAGG
CCATTTTACTTAGGGAATTTTATCAGCTTTCTCTTTTATGAGACACTAGTAGTTTCACTA
GTAGTACTTTAGCTCTGGTTTAAAAGCCCATAAGTTGTAATTCCTTAAATTACAAGGAAT
TGAATTACAATCTTCAAGCATAAAACAGGCATTTACATTCTTTTTATATTGATTACTTTA
GTAAGATAGCATACGAAGAAAATAATTTTAATATGAACTAGCTATGCACTTTGATCCACT
TCAAATCATTTTATGTCTTTGGGACAGGAAAGTTGGGGTTCAGTTTATCTGTAGACGATT
TAGTGGAAAAGCGAATCTTTTTTTATTCATAATATTTACATCTTTAAAAGCTGATAAGCT
GGGGATTATCTTTTTTTTTTGCAGAAGAAAGTATATTTAAAATATTTGTAGATTTATAGC
AAAAACAGAGTATTTAAAGGTAAAATAACAATTTGTATCTGTGTTGTTTTGGACTGTGCT
ACCAGCTTAGTGCAGTAGCTGCTTTGTCATAAAAATGTCTTATCACTTCAAGGATTTTAC
TTTTAAAATTGTGGTTTACAAGTTGAGAAGGAATTATTTCTATGTAAATTTCTATCATTT
AACACATCACCATCAAAAAGAATATTAGAATCTAGCATATAAATGATGAAGTAATAAAAA
ATAATCTTCATGCTTTATAAAACCACGCATGAATCAGATTTGAATGAGGAATGCCTTCCT
CATCTTGGAAAAGCATTGGCTTGGATTTTGAAGTGTTCTGAAAATGAAGTATTAAGATCT
TATTTTTGTAAGCAAAATCAGACTTACAAAGCATGCCAAAAGTAAGCTAATTCATAAATT
TAATATATATCATTAAATAAGGAAATTGAGTATGTGCTGAATAGAACACTTTCCTTTTTT
AAAAATTAGACTCTCTCATTCTGAAGTTATAAAGAAAGGCCTATCCTTTCAATAAAGTAG
CTCCTTTTCTGTTTGCATATTTCAAGTTTTAATTTGTGATCTGTTTACTCCTTCTATGTC
AAGACTTTAAAAAGTATGAAAATAAAAATGTCCTCCCCCTTAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTGAATTGATGATGACATGATGAGATATTGTGGATGGTTTCCACATCCATAGGCTCAGG
ATGCTGGACAAAAAATAACTCTTACTGTCTATGCCTTCATATTGAGAAAGGAGAAATTTA
GTTTTAAACCTGAAAAAATATGACTATTTTGGTTGCTCACTGTAAGTACTGAAAAAGAGT
GATGGCTTTGAAGTTTTAGATAAAAAATTACGGAGAATGTAATTATTATTGATATTTAGG
CCATTTTACTTAGGGAATTTTATCAGCTTTCTCTTTTATGAGACACTAGTAGTTTCACTA
GTAGTACTTTAGCTCTGGTTTAAAAGCCCATAAGTTGTAATTCCTTAAATTACAAGGAAT
TGAATTACAATCTTCAAGCATAAAACAGGCATTTACATTCTTTTTATATTGATTACTTTA
GTAAGATAGCATACGAAGAAAATAATTTTAATATGAACTAGCTATGCACTTTGATCCACT
TCAAATCATTTTATGTCTTTGGGACAGGAAAGTTGGGGTTCAGTTTATCTGTAGACGATT
TAGTGGAAAAGCGAATCTTTTTTTATTCATAATATTTACATCTTTAAAAGCTGATAAGCT
GGGGATTATCTTTTTTTTTTGCAGAAGAAAGTATATTTAAAATATTTGTAGATTTATAGC
AAAAACAGAGTATTTAAAGGTAAAATAACAATTTGTATCTGTGTTGTTTTGGACTGTGCT
ACCAGCTTAGTGCAGTAGCTGCTTTGTCATAAAAATGTCTTATCACTTCAAGGATTTTAC
TTTTAAAATTGTGGTTTACAAGTTGAGAAGGAATTATTTCTATGTAAATTTCTATCATTT
AACACATCACCATCAAAAAGAATATTAGAATCTAGCATATAAATGATGAAGTAATAAAAA
ATAATCTTCATGCTTTATAAAACCACGCATGAATCAGATTTGAATGAGGAATGCCTTCCT
CATCTTGGAAAAGCATTGGCTTGGATTTTGAAGTGTTCTGAAAATGAAGTATTAAGATCT
TATTTTTGTAAGCAAAATCAGACTTACAAAGCATGCCAAAAGTAAGCTAATTCATAAATT
TAATATATATCATTAAATAAGGAAATTGAGTATGTGCTGAATAGAACACTTTCCTTTTTT
AAAAATTAGACTCTCTCATTCTGAAGTTATAAAGAAAGGCCTATCCTTTCAATAAAGTAG
CTCCTTTTCTGTTTGCATATTTCAAGTTTTAATTTGTGATCTGTTTACTCCTTCTATGTC
AAGACTTTAAAAAGTATGAAAATAAAAATGTCCTCCCCCTTAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-1301, gnl|bosTau2|chr1 (69219067-69220355)
               

               
               1-1301, gnl|Hg17|chr3 (162451380-162452781)
               

               
               1-1301, gnl|Mm7|chr3 (69849887-69851218)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1301, gnl|bosTau2|chr1 (69219067-69220355)
               

               
               1-1301, gnl|Hg17|chr3 (162451380-162452781)
               

               
               1-1301, gnl|Mm7|chr3 (69849887-69851218)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

Help | Less info


               
               ret (0.514933)
               

               
               mgp (0.461361)
               

               
               mga (0.32041)
               

               
               tbr (0.308356)
               

               
               kid (0.259471)
               

               
               sag (0.182715)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               tra (0.123092)
               

               
               ldo (0.0970026)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.514933)
               

               
               mgp (0.461361)
               

               
               mga (0.32041)
               

               
               tbr (0.308356)
               

               
               kid (0.259471)
               

               
               sag (0.182715)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               tra (0.123092)
               

               
               ldo (0.0970026)

	1-1301, gnl\|bosTau2\|chr1 (69219067-69220355)
	1-1301, gnl\|Hg17\|chr3 (162451380-162452781)
	1-1301, gnl\|Mm7\|chr3 (69849887-69851218)

	ret (0.514933)
	mgp (0.461361)
	mga (0.32041)
	tbr (0.308356)
	kid (0.259471)
	sag (0.182715)
	liv (0.146284)
	lin (0.145603)
	tra (0.123092)
	ldo (0.0970026)