Non-Coding RNA Search

Ss1.1-rret35_p21.5

Sequence:


               
               GAACAAGAACTGGAACTAATGAAGAAGGAATGTAGAGATCTCAAAATAGAGCTGCAGAAA
GCCAAACAAACGGATCCTCCTCAGGAAGACAGTCTGAAGAGCAGAGATCTCCAAAGACTA
AGCACTTCAAGTGATAATATGCAAAATGCATACTGGGAACTAAAGAGAGAAATGTCTAAT
TTGCATCTGGTGACTCAAGTACAAGCTGAGCTACTAAGAAAGCTGAAAACCCCAACTGCA
ATCAAGAAAGCTGGCACCCCAGCAGGATACACAGAAGACCTCGGGAAAGAGAGCACAAAA
CTGCACTTGACAAATCTCACCGCAGCGTACAGAAGACAGCCTACCCTCTCACCAAACAGC
AGAGCCCTTTGTCAGGCCACACCTTCCCCTTTACCAGGAGACACAAAGGTTTTATCAGAG
AGAGCCATTCTCCAGTCATGGACAGATAATGAGCAAACCATTCTTCATGACAATACAGAC
TTTCAGGAACACAACTCTTATGGCAGAAATTCTCTGGAAGATAATTCTTGGGTATTCCCA
AGCCCTCCTAAATCAAGTGAGACACCATTTGGGGAAGCTAAAAATAAAACTTTGCCTTTA
CCCAACCTGCCACCACTGCATTACTTGGATCAACGTAATCAAAACTGCCAGTATAAAAGC
TAATTCTGAAGAGGGTCACGATTTGGTCCTGAGGTTGCCATTATCTCTGTGGTTTTCTTA
AGAAACCATTAACAAACTGAAAGCAGATTCTCATTCAACTTTTGCAGAGTTCTTCAGTAT
TTACATTTGTACATAATGTACCATATTATGTAGTTGATTTTTCAGTGTGAAAGAATACCC
TCCAGCTCCATATTCTGGCTCAGAATCAGATGATATATGCTGCTAATAATAAATTAATAA
AATGTTTCAAAATGACAGTTCTACCTTTGATGATAATTATAAATTTCTGCCTCACACGAG
GAAGGGAAATGAAAGTTTTCAGACATGGTTTTTACAAAGCATGTGAAATGCCTGAATATC
CATTTATAAAAATAAAGGAGACCATTATATCAGAAAAATCATAGAAGTTGCTTTAAGCTG
CATAAAGAAATGGCAATGTGAATAGGTTATATTTCTATTAACTTTATAATGTATACAAAT
TTGAAAATTATAGTGCAACAACAGTGTCTGGGTTACTCCATCTTTATGTGCTATTGTGTC
TAAGTTTGAGACTTAAATTTTTTTAATCACAATGTTGTTAAAAATTTGAAGTTGCAATTT
GAATGTTAAGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAACAAGAACTGGAACTAATGAAGAAGGAATGTAGAGATCTCAAAATAGAGCTGCAGAAA
GCCAAACAAACGGATCCTCCTCAGGAAGACAGTCTGAAGAGCAGAGATCTCCAAAGACTA
AGCACTTCAAGTGATAATATGCAAAATGCATACTGGGAACTAAAGAGAGAAATGTCTAAT
TTGCATCTGGTGACTCAAGTACAAGCTGAGCTACTAAGAAAGCTGAAAACCCCAACTGCA
ATCAAGAAAGCTGGCACCCCAGCAGGATACACAGAAGACCTCGGGAAAGAGAGCACAAAA
CTGCACTTGACAAATCTCACCGCAGCGTACAGAAGACAGCCTACCCTCTCACCAAACAGC
AGAGCCCTTTGTCAGGCCACACCTTCCCCTTTACCAGGAGACACAAAGGTTTTATCAGAG
AGAGCCATTCTCCAGTCATGGACAGATAATGAGCAAACCATTCTTCATGACAATACAGAC
TTTCAGGAACACAACTCTTATGGCAGAAATTCTCTGGAAGATAATTCTTGGGTATTCCCA
AGCCCTCCTAAATCAAGTGAGACACCATTTGGGGAAGCTAAAAATAAAACTTTGCCTTTA
CCCAACCTGCCACCACTGCATTACTTGGATCAACGTAATCAAAACTGCCAGTATAAAAGC
TAATTCTGAAGAGGGTCACGATTTGGTCCTGAGGTTGCCATTATCTCTGTGGTTTTCTTA
AGAAACCATTAACAAACTGAAAGCAGATTCTCATTCAACTTTTGCAGAGTTCTTCAGTAT
TTACATTTGTACATAATGTACCATATTATGTAGTTGATTTTTCAGTGTGAAAGAATACCC
TCCAGCTCCATATTCTGGCTCAGAATCAGATGATATATGCTGCTAATAATAAATTAATAA
AATGTTTCAAAATGACAGTTCTACCTTTGATGATAATTATAAATTTCTGCCTCACACGAG
GAAGGGAAATGAAAGTTTTCAGACATGGTTTTTACAAAGCATGTGAAATGCCTGAATATC
CATTTATAAAAATAAAGGAGACCATTATATCAGAAAAATCATAGAAGTTGCTTTAAGCTG
CATAAAGAAATGGCAATGTGAATAGGTTATATTTCTATTAACTTTATAATGTATACAAAT
TTGAAAATTATAGTGCAACAACAGTGTCTGGGTTACTCCATCTTTATGTGCTATTGTGTC
TAAGTTTGAGACTTAAATTTTTTTAATCACAATGTTGTTAAAAATTTGAAGTTGCAATTT
GAATGTTAAGAC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|55619973|ref|XP_516339.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55619973|ref|XP_516339.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               249-1227, gnl|bosTau2|chr22 (16784-17737)
               

               
               249-1227, gnl|Hg17|chr3 (28340951-28339979)
               

               
               249-1227, gnl|Mm7|chr9 (117743651-117744533)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               249-1227, gnl|bosTau2|chr22 (16784-17737)
               

               
               249-1227, gnl|Hg17|chr3 (28340951-28339979)
               

               
               249-1227, gnl|Mm7|chr9 (117743651-117744533)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               pro (0.512033)
               

               
               cbe (0.239234)
               

               
               tes (0.207814)
               

               
               sin (0.174948)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               thg (0.126791)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               cbe (0.239234)
               

               
               tes (0.207814)
               

               
               sin (0.174948)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               thg (0.126791)

	249-1227, gnl\|bosTau2\|chr22 (16784-17737)
	249-1227, gnl\|Hg17\|chr3 (28340951-28339979)
	249-1227, gnl\|Mm7\|chr9 (117743651-117744533)

	pro (0.512033)
	cbe (0.239234)
	tes (0.207814)
	sin (0.174948)
	tbr (0.154178)
	isp (0.150376)
	fat (0.147427)
	pla (0.133672)
	kid (0.129735)
	ret (0.128733)
	sug (0.127291)
	thg (0.126791)