Non-Coding RNA Search

Ss1.1-rret36_b24.5

Sequence:


               
               TATTCCATGTAACGCTCCTCCGAGTTAGCTAGCCGGTGCAAGACCAGCCGGGACACCATG
GAATTATTAAAAGTACAAACTGACAGTGTGTATATTTAATTTAAAAACTTATTTAAAGAT
TCACACGCTCTCAATGAGACTTTTGAGAGCAGTCTGTTTTCTGTAATGTCTGATACTAGA
AACTAATTTGCTTCATATTTTAGTTGTATTCAAGATTTGAAGATGTATTTTATAGACAAG
TTCTGTTTTTGAACTTCGTGGAACTATTCCAATCAATTTACCAGTTATGATGCGTATTTA
CATTATGAATGTATAATCCAAACATTATTTGTAAGGCCTACAGTATGTTTTTATTACCTA
ACTTTTTTATACAGTGTCTCTTGTCTTGACTATGATATTGGAGTCTGAGTTGTCGGCTTG
GTCCCTTAAAGTTTCTAGTTACAGACAAAATCATACTGTGATTTTATTTTTAATATGGAT
ATGCTATCAAACTGTGATACACTTATAATTCACTGGTCCTGCATCAGGAGATGGAGTGGG
GAAAACTGTATTTGATACAGTTCGTATCTGAATAATCTGTATGGTTTATACAGTTTGTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATTCCATGTAACGCTCCTCCGAGTTAGCTAGCCGGTGCAAGACCAGCCGGGACACCATG
GAATTATTAAAAGTACAAACTGACAGTGTGTATATTTAATTTAAAAACTTATTTAAAGAT
TCACACGCTCTCAATGAGACTTTTGAGAGCAGTCTGTTTTCTGTAATGTCTGATACTAGA
AACTAATTTGCTTCATATTTTAGTTGTATTCAAGATTTGAAGATGTATTTTATAGACAAG
TTCTGTTTTTGAACTTCGTGGAACTATTCCAATCAATTTACCAGTTATGATGCGTATTTA
CATTATGAATGTATAATCCAAACATTATTTGTAAGGCCTACAGTATGTTTTTATTACCTA
ACTTTTTTATACAGTGTCTCTTGTCTTGACTATGATATTGGAGTCTGAGTTGTCGGCTTG
GTCCCTTAAAGTTTCTAGTTACAGACAAAATCATACTGTGATTTTATTTTTAATATGGAT
ATGCTATCAAACTGTGATACACTTATAATTCACTGGTCCTGCATCAGGAGATGGAGTGGG
GAAAACTGTATTTGATACAGTTCGTATCTGAATAATCTGTATGGTTTATACAGTTTGTGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               485-600, + strand, RNAz p=0.952938

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               485-600, + strand, RNAz p=0.952938

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               485-600, DB299564 BRACE3 Homo sapiens cDNA clone BRACE3021580 3', mRNA 
(dbj|DB299564.1|), blast E-value=0, identity=98.28% 
               

               
               485-600, DB519216 RIKEN full-length enriched human cDNA library, testis Homo 
(dbj|DB519216.2|), blast E-value=0, identity=98.28% 
               

               
               485-600, DB522666 RIKEN full-length enriched human cDNA library, testis Homo 
(dbj|DB522666.2|), blast E-value=0, identity=98.28% 
               

               
               485-600, DB524756 RIKEN full-length enriched human cDNA library, testis Homo 
(dbj|DB524756.2|), blast E-value=0, identity=98.28% 
               

               
               485-600, DG32-39c5 DG32-liver Canis familiaris cDNA 3', mRNA sequence 
(gb|CO705685.1|), blast E-value=0, identity=98.28% 
               

               
               485-600, GL-Cf-8432 GLGC-LIB0001-cf Canis familiaris Normalized Mixed Tissue 
(gb|DN751639.1|), blast E-value=0, identity=98.28%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               485-600, DB299564 BRACE3 Homo sapiens cDNA clone BRACE3021580 3', mRNA 
(dbj|DB299564.1|), blast E-value=0, identity=98.28% 
               

               
               485-600, DB519216 RIKEN full-length enriched human cDNA library, testis Homo 
(dbj|DB519216.2|), blast E-value=0, identity=98.28% 
               

               
               485-600, DB522666 RIKEN full-length enriched human cDNA library, testis Homo 
(dbj|DB522666.2|), blast E-value=0, identity=98.28% 
               

               
               485-600, DB524756 RIKEN full-length enriched human cDNA library, testis Homo 
(dbj|DB524756.2|), blast E-value=0, identity=98.28% 
               

               
               485-600, DG32-39c5 DG32-liver Canis familiaris cDNA 3', mRNA sequence 
(gb|CO705685.1|), blast E-value=0, identity=98.28% 
               

               
               485-600, GL-Cf-8432 GLGC-LIB0001-cf Canis familiaris Normalized Mixed Tissue 
(gb|DN751639.1|), blast E-value=0, identity=98.28%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-600, gnl|bosTau2|chr25 (36665632-36666232)
               

               
               1-600, gnl|Hg17|chr7 (5973718-5974318)
               

               
               1-600, gnl|Mm7|chr5 (142743308-142742719)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-600, gnl|bosTau2|chr25 (36665632-36666232)
               

               
               1-600, gnl|Hg17|chr7 (5973718-5974318)
               

               
               1-600, gnl|Mm7|chr5 (142743308-142742719)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               cte (0.29274)
               

               
               fce (0.271592)
               

               
               lyg (0.266205)
               

               
               gul (0.177588)
               

               
               ret (0.128733)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)
               

               
               fce (0.271592)
               

               
               lyg (0.266205)
               

               
               gul (0.177588)
               

               
               ret (0.128733)

	485-600, DB299564 BRACE3 Homo sapiens cDNA clone BRACE3021580 3', mRNA (dbj\|DB299564.1\|), blast E-value=0, identity=98.28%
	485-600, DB519216 RIKEN full-length enriched human cDNA library, testis Homo (dbj\|DB519216.2\|), blast E-value=0, identity=98.28%
	485-600, DB522666 RIKEN full-length enriched human cDNA library, testis Homo (dbj\|DB522666.2\|), blast E-value=0, identity=98.28%
	485-600, DB524756 RIKEN full-length enriched human cDNA library, testis Homo (dbj\|DB524756.2\|), blast E-value=0, identity=98.28%
	485-600, DG32-39c5 DG32-liver Canis familiaris cDNA 3', mRNA sequence (gb\|CO705685.1\|), blast E-value=0, identity=98.28%
	485-600, GL-Cf-8432 GLGC-LIB0001-cf Canis familiaris Normalized Mixed Tissue (gb\|DN751639.1\|), blast E-value=0, identity=98.28%

	1-600, gnl\|bosTau2\|chr25 (36665632-36666232)
	1-600, gnl\|Hg17\|chr7 (5973718-5974318)
	1-600, gnl\|Mm7\|chr5 (142743308-142742719)

	cte (0.29274)
	fce (0.271592)
	lyg (0.266205)
	gul (0.177588)
	ret (0.128733)