Ss1.1-rret36_f12.5
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
TTTATGCCATTACAACTCTTCACAACCTTTTATTGCATCAGGAAGGAGCTAAAATGGCAG TGCGTTTAGCTGGCGGGCTGCAGAAAATGGTTGCCTTGCTCAACAAAACAAATGTTAAAT TCTTGGCTATTACAACAGACTGCCTTCAGATTTTAGCTTACGGCAATCAAGAAAGCAAGC TGATCATTCTGGCTAGTGGTGGACCTCAAGCTTTAGTGAATATAATGAGGACCTACACTT ATGAGAAACTACTGTGGACCACAAGCCGAGTACTGAAGGTGCTCTCTGTCTGCTCTAGTA ATAAGCCAGCTATTGTAGAAGCTGGTGGAATGCAAGCTTTAGGACTTCATCTGACAGATC CAAGTCAACGTCTTGTTCAGAACTGTCTTTGGACTCTTAGGAATCTTTCAGATGCTGCAA CTAAACAGGAAGGGATGGAAGGTCTTCTTGGGACCCTTGTTCAGCTTCTGGGCTCGGATG ATATAAATGTGGTTACCTGTGCAGCTGGAATTCTTTCTAATCTCACTTGCAATAATTATA AAAACAAGATGATGGTGTGCCAAGTGGGTGGTATAGAGGCTCTTGTGCGTACTGTCCTTC GTGCTGGTGACAGGGAGGACATCACTGAACCTGCCATCTGTGCTCTCCGTCATCTGACCA GCCGACACCAGGAAGCTGAGATGGCCCAGAATGCTGTTCGCCTTCACTACGGACTACCAG TTGTGGTTAAACTCCTACATCCACCATCCCATTGGCCTCTCATCAAGGCTACCGTTGGAT TGATTCGAAATCTTGCCCTTTGTCCAGCAAATCATGCACCTTTGCGAGAGCAGGGTGCCA TTCCACGACTAGTTCAGTTGCTGGTTCGTGCTCATCAGGATACCCAGCGCCGTACGTCCA TGGGTGGAACACAGCAACAGTTTGTGGAGGGGGTCCGCATGGAAGAAATAGTTGAAGGTT GTACTGGAGCCCTTCATATCCTAGCTCGGGATGTTCACAACCGAATTGTTATCAGAGGAC TAAATACCATTCCATTGTTTGTGCAGCTGCTTTATTCTCCCATCGAAAATATCCAAAGAG TAGCTGCAGGGGTCCTCTGTGAACTTGCTCAGGACAAGGAGGCTGCAGAAGCTATTGAAG CTGAGGGAGCCACAGCACCTCTGACAGAATTACTCCACTCTAGGAATGAAGGTGTGGCAA CATACGCAGCTGCTGTTTTGTTCCGAATGTCTGAGGACAAGCCCCAGGATTATAAGAAAC GGCTTTCGGTTGAGCTGACCAGTTCTCTTTTCAGAACAGAGCCAATGGCTTGGAATGAGA CTGCTGATCTTGGACTTGATATTGGTGCCCAGGGAGAACCCCTTGGATATCGCCAGGATG ATCCCAGCTATCGTTCTTTTCACTCTGGTGGATACGGCCAGGATGCCTTGGGTATGGACC CCATGATGGAGCATGAGATGGGTGGCCACCACCCCGGTGCTGACTATCCAGTTGATGGGC TGCCAGATCTGGGGCATGCCCAGGACCTCATGGATGGGCTGCCTCCAGGTGACAGCAATC AGCTGGCCTGGTTTGATACTGACCTGTAAATCATCCTTTAGGAGTAACGTTAAAAAAGCC TTTTGGGAGTGACTCAAGAAGTGAAGAATGCACAAGAATGGATCACAAGATGGAATTTAT CAAACTCTAGCCTTGCTTGTTAAAACACTTTTTTTTTAAATATCTGTAATGGTACTGACT TTGCTTGCTTTGAAGTAGCTCTTTCTTTGTTTCTTTCCTTTTTTTGCAGTAACTGTTAGT TTTTTAAGTCTCATAGTGTTAAGTTATAGTGAATACTGCTACAGCAATTTCTAATTTTTA AGAATTGAGTAATGGTGTAGAACACTAATTCATAATCACTCTAATTGTAATCTGAATAAA GTGTAACATTGTGTAGCCTTTTTGTATAAAATAGACAAATAGAAATGGTCCAATTAGTTT CCTTTTTAATATGCTTAAAATAAGCAGGTGGATCTAGGGAACAATTGAAGTAAACTTTTT GTTCTGGTCCTTTTTGGTCGAGGAGTAACAATACAAATGGATTTTGGGAGTGACTCAAGA AGTGAAGAATGCACAAGAATGGATCACAAGATGGAATTTATCAAACTCTAGCCTTGCTTG TTAAAACACTTTTTTTTTAAATATCTGTAATGGTACTGACTTTGCTTGCTTTGAAGTAGC TCTTTCTTTGTTTCTTTCCTTTTTTTGCAGTAACTGTTAGTTTTTTAAGTCTCATAGTGT TAAGTTATAGTGAATACTGCTACAGCAATTTCTAATTTTTAAGAATTGAGTAATGGTGTA GAACACTAATTCATAATCACTCTAATTGTAATCTGAATAAAGTGTAACATTGTGTAGCCT TTTTGTATAAAATAGACAAATAGAAATGGTCCAATTAGTTTCCTTTTTAATATGCTTAAA ATAAGCAGGTGGATCTATTTCATGTTTTTGATCAAAAACTTTATTTGGGATATGTATGGT TAGGGTAAATCAGTAAGAGGTGTTATTTGGAACCTTGTTTTGAACAGTTTACCAGTTGCC TTTTATCCCAAAGTTGTTGTAACCTGCTGTGATACAATGCTTCAAGAGAAAATGCGGTTA TAAAAATGGTTCAGAATTAAACTT |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
TTTATGCCATTACAACTCTTCACAACCTTTTATTGCATCAGGAAGGAGCTAAAATGGCAG TGCGTTTAGCTGGCGGGCTGCAGAAAATGGTTGCCTTGCTCAACAAAACAAATGTTAAAT TCTTGGCTATTACAACAGACTGCCTTCAGATTTTAGCTTACGGCAATCAAGAAAGCAAGC TGATCATTCTGGCTAGTGGTGGACCTCAAGCTTTAGTGAATATAATGAGGACCTACACTT ATGAGAAACTACTGTGGACCACAAGCCGAGTACTGAAGGTGCTCTCTGTCTGCTCTAGTA ATAAGCCAGCTATTGTAGAAGCTGGTGGAATGCAAGCTTTAGGACTTCATCTGACAGATC CAAGTCAACGTCTTGTTCAGAACTGTCTTTGGACTCTTAGGAATCTTTCAGATGCTGCAA CTAAACAGGAAGGGATGGAAGGTCTTCTTGGGACCCTTGTTCAGCTTCTGGGCTCGGATG ATATAAATGTGGTTACCTGTGCAGCTGGAATTCTTTCTAATCTCACTTGCAATAATTATA AAAACAAGATGATGGTGTGCCAAGTGGGTGGTATAGAGGCTCTTGTGCGTACTGTCCTTC GTGCTGGTGACAGGGAGGACATCACTGAACCTGCCATCTGTGCTCTCCGTCATCTGACCA GCCGACACCAGGAAGCTGAGATGGCCCAGAATGCTGTTCGCCTTCACTACGGACTACCAG TTGTGGTTAAACTCCTACATCCACCATCCCATTGGCCTCTCATCAAGGCTACCGTTGGAT TGATTCGAAATCTTGCCCTTTGTCCAGCAAATCATGCACCTTTGCGAGAGCAGGGTGCCA TTCCACGACTAGTTCAGTTGCTGGTTCGTGCTCATCAGGATACCCAGCGCCGTACGTCCA TGGGTGGAACACAGCAACAGTTTGTGGAGGGGGTCCGCATGGAAGAAATAGTTGAAGGTT GTACTGGAGCCCTTCATATCCTAGCTCGGGATGTTCACAACCGAATTGTTATCAGAGGAC TAAATACCATTCCATTGTTTGTGCAGCTGCTTTATTCTCCCATCGAAAATATCCAAAGAG TAGCTGCAGGGGTCCTCTGTGAACTTGCTCAGGACAAGGAGGCTGCAGAAGCTATTGAAG CTGAGGGAGCCACAGCACCTCTGACAGAATTACTCCACTCTAGGAATGAAGGTGTGGCAA CATACGCAGCTGCTGTTTTGTTCCGAATGTCTGAGGACAAGCCCCAGGATTATAAGAAAC GGCTTTCGGTTGAGCTGACCAGTTCTCTTTTCAGAACAGAGCCAATGGCTTGGAATGAGA CTGCTGATCTTGGACTTGATATTGGTGCCCAGGGAGAACCCCTTGGATATCGCCAGGATG ATCCCAGCTATCGTTCTTTTCACTCTGGTGGATACGGCCAGGATGCCTTGGGTATGGACC CCATGATGGAGCATGAGATGGGTGGCCACCACCCCGGTGCTGACTATCCAGTTGATGGGC TGCCAGATCTGGGGCATGCCCAGGACCTCATGGATGGGCTGCCTCCAGGTGACAGCAATC AGCTGGCCTGGTTTGATACTGACCTGTAAATCATCCTTTAGGAGTAACGTTAAAAAAGCC TTTTGGGAGTGACTCAAGAAGTGAAGAATGCACAAGAATGGATCACAAGATGGAATTTAT CAAACTCTAGCCTTGCTTGTTAAAACACTTTTTTTTTAAATATCTGTAATGGTACTGACT TTGCTTGCTTTGAAGTAGCTCTTTCTTTGTTTCTTTCCTTTTTTTGCAGTAACTGTTAGT TTTTTAAGTCTCATAGTGTTAAGTTATAGTGAATACTGCTACAGCAATTTCTAATTTTTA AGAATTGAGTAATGGTGTAGAACACTAATTCATAATCACTCTAATTGTAATCTGAATAAA GTGTAACATTGTGTAGCCTTTTTGTATAAAATAGACAAATAGAAATGGTCCAATTAGTTT CCTTTTTAATATGCTTAAAATAAGCAGGTGGATCTAGGGAACAATTGAAGTAAACTTTTT GTTCTGGTCCTTTTTGGTCGAGGAGTAACAATACAAATGGATTTTGGGAGTGACTCAAGA AGTGAAGAATGCACAAGAATGGATCACAAGATGGAATTTATCAAACTCTAGCCTTGCTTG TTAAAACACTTTTTTTTTAAATATCTGTAATGGTACTGACTTTGCTTGCTTTGAAGTAGC TCTTTCTTTGTTTCTTTCCTTTTTTTGCAGTAACTGTTAGTTTTTTAAGTCTCATAGTGT TAAGTTATAGTGAATACTGCTACAGCAATTTCTAATTTTTAAGAATTGAGTAATGGTGTA GAACACTAATTCATAATCACTCTAATTGTAATCTGAATAAAGTGTAACATTGTGTAGCCT TTTTGTATAAAATAGACAAATAGAAATGGTCCAATTAGTTTCCTTTTTAATATGCTTAAA ATAAGCAGGTGGATCTATTTCATGTTTTTGATCAAAAACTTTATTTGGGATATGTATGGT TAGGGTAAATCAGTAAGAGGTGTTATTTGGAACCTTGTTTTGAACAGTTTACCAGTTGCC TTTTATCCCAAAGTTGTTGTAACCTGCTGTGATACAATGCTTCAAGAGAAAATGCGGTTA TAAAAATGGTTCAGAATTAAACTT |
Coded protein: 1 entry(ies) | More info |
Predicted RNA structure(s): 3 entry(ies) | More info |
Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
537-2597, + strand, RNAz p=0.972941 | |
1044-1197, + strand, RNAz p=0.924602 | |
1828-1941, + strand, RNAz p=0.676529 |
Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
537-2597, + strand, RNAz p=0.972941 | |
1044-1197, + strand, RNAz p=0.924602 | |
1828-1941, + strand, RNAz p=0.676529 |
Homologous human UTR: 1 entry(ies) | More info |
Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
3' of NM_001904, + |
Aligned organism(s): 47 entry(ies) | More info |
Aligned organism(s): 47 entry(ies) | Help | Less info |
1-179, gnl|bosTau2|chr20 (14643243-14643065) | |
1-179, gnl|Hg17|chr3 (41242178-41242356) | |
1-179, gnl|Mm7|chr9 (120649943-120650121) | |
418-768, gnl|bosTau2|chr20 (14638663-14638313) | |
418-768, gnl|canFam2|chr23 (13575243-13575615) | |
418-768, gnl|danRer3|chr16 (1304724-1305079) | |
418-768, gnl|dasNov1|scaffold_10924 (21730-21358) | |
418-768, gnl|echTel1|scaffold_315032 (92886-92512) | |
418-768, gnl|fr1|chrUn (55441412-55440975) | |
418-768, gnl|galGal2|chr2 (42551203-42551571) | |
418-768, gnl|hg17|chr3 (41250008-41250380) | |
418-768, gnl|Hg17|chr3 (41250013-41250363) | |
418-768, gnl|loxAfr1|scaffold_62410 (12115-11748) | |
418-768, gnl|mm7|chr9 (120653647-120654019) | |
418-768, gnl|Mm7|chr9 (120653652-120654002) | |
418-768, gnl|monDom2|scaffold_7 (64490030-64489654) | |
418-768, gnl|oryCun1|scaffold_173799 (51679-51307) | |
418-768, gnl|panTro1|chr2 (42396598-42396970) | |
418-768, gnl|rheMac2|chr2 (95303559-95303187) | |
418-768, gnl|rn3|chr8 (126003322-126003694) | |
418-768, gnl|tetNig1|chr8 (3247567-3247135) | |
418-768, gnl|xenTro1|scaffold_807 (136693-137051) | |
1044-1197, gnl|bosTau2|chr20 (14634947-14634794) | |
1044-1197, gnl|canFam2|chr23 (13578275-13578439) | |
1044-1197, gnl|danRer3|chr16 (1308672-1308836) | |
1044-1197, gnl|dasNov1|scaffold_10924 (18770-18606) | |
1044-1197, gnl|echTel1|scaffold_315032 (88466-88300) | |
1044-1197, gnl|fr1|chrUn (55440389-55440225) | |
1044-1197, gnl|galGal2|chr2 (42553064-42553228) | |
1044-1197, gnl|hg17|chr3 (41252837-41253001) | |
1044-1197, gnl|Hg17|chr3 (41252841-41252994) | |
1044-1197, gnl|loxAfr1|scaffold_62410 (8496-8332) | |
1044-1197, gnl|mm7|chr9 (120655844-120656008) | |
1044-1197, gnl|Mm7|chr9 (120655848-120656001) | |
1044-1197, gnl|monDom2|scaffold_7 (64486715-64486551) | |
1044-1197, gnl|oryCun1|scaffold_173799 (48571-48407) | |
1044-1197, gnl|panTro1|chr2 (42399469-42399633) | |
1044-1197, gnl|rheMac2|chr2 (95300721-95300557) | |
1044-1197, gnl|rn3|chr8 (126005461-126005625) | |
1044-1197, gnl|tetNig1|chr8 (3246575-3246417) | |
1044-1197, gnl|xenTro1|scaffold_807 (139456-139620) | |
1600-2016, gnl|bosTau2|chr20 (14632004-14631597) | |
1600-2016, gnl|Hg17|chr3 (41256312-41256741) | |
1600-2016, gnl|Mm7|chr9 (120658276-120658647) | |
2017-2664, gnl|bosTau2|chr20 (14632048-14631411) | |
2017-2664, gnl|Hg17|chr3 (41256268-41256927) | |
2017-2664, gnl|Mm7|chr9 (120658232-120658829) |
Aligned organism(s): 47 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
1-179, gnl|bosTau2|chr20 (14643243-14643065) | |
1-179, gnl|Hg17|chr3 (41242178-41242356) | |
1-179, gnl|Mm7|chr9 (120649943-120650121) | |
418-768, gnl|bosTau2|chr20 (14638663-14638313) | |
418-768, gnl|canFam2|chr23 (13575243-13575615) | |
418-768, gnl|danRer3|chr16 (1304724-1305079) | |
418-768, gnl|dasNov1|scaffold_10924 (21730-21358) | |
418-768, gnl|echTel1|scaffold_315032 (92886-92512) | |
418-768, gnl|fr1|chrUn (55441412-55440975) | |
418-768, gnl|galGal2|chr2 (42551203-42551571) | |
418-768, gnl|hg17|chr3 (41250008-41250380) | |
418-768, gnl|Hg17|chr3 (41250013-41250363) | |
418-768, gnl|loxAfr1|scaffold_62410 (12115-11748) | |
418-768, gnl|mm7|chr9 (120653647-120654019) | |
418-768, gnl|Mm7|chr9 (120653652-120654002) | |
418-768, gnl|monDom2|scaffold_7 (64490030-64489654) | |
418-768, gnl|oryCun1|scaffold_173799 (51679-51307) | |
418-768, gnl|panTro1|chr2 (42396598-42396970) | |
418-768, gnl|rheMac2|chr2 (95303559-95303187) | |
418-768, gnl|rn3|chr8 (126003322-126003694) | |
418-768, gnl|tetNig1|chr8 (3247567-3247135) | |
418-768, gnl|xenTro1|scaffold_807 (136693-137051) | |
1044-1197, gnl|bosTau2|chr20 (14634947-14634794) | |
1044-1197, gnl|canFam2|chr23 (13578275-13578439) | |
1044-1197, gnl|danRer3|chr16 (1308672-1308836) | |
1044-1197, gnl|dasNov1|scaffold_10924 (18770-18606) | |
1044-1197, gnl|echTel1|scaffold_315032 (88466-88300) | |
1044-1197, gnl|fr1|chrUn (55440389-55440225) | |
1044-1197, gnl|galGal2|chr2 (42553064-42553228) | |
1044-1197, gnl|hg17|chr3 (41252837-41253001) | |
1044-1197, gnl|Hg17|chr3 (41252841-41252994) | |
1044-1197, gnl|loxAfr1|scaffold_62410 (8496-8332) | |
1044-1197, gnl|mm7|chr9 (120655844-120656008) | |
1044-1197, gnl|Mm7|chr9 (120655848-120656001) | |
1044-1197, gnl|monDom2|scaffold_7 (64486715-64486551) | |
1044-1197, gnl|oryCun1|scaffold_173799 (48571-48407) | |
1044-1197, gnl|panTro1|chr2 (42399469-42399633) | |
1044-1197, gnl|rheMac2|chr2 (95300721-95300557) | |
1044-1197, gnl|rn3|chr8 (126005461-126005625) | |
1044-1197, gnl|tetNig1|chr8 (3246575-3246417) | |
1044-1197, gnl|xenTro1|scaffold_807 (139456-139620) | |
1600-2016, gnl|bosTau2|chr20 (14632004-14631597) | |
1600-2016, gnl|Hg17|chr3 (41256312-41256741) | |
1600-2016, gnl|Mm7|chr9 (120658276-120658647) | |
2017-2664, gnl|bosTau2|chr20 (14632048-14631411) | |
2017-2664, gnl|Hg17|chr3 (41256268-41256927) | |
2017-2664, gnl|Mm7|chr9 (120658232-120658829) |
Expressed library(ies): 75 entry(ies) | More info |
Expressed library(ies): 75 entry(ies) | Help | Less info |
ret (2.57467) | |
tra (1.72329) | |
mgp (1.61476) | |
liv (1.31656) | |
kid (1.03788) | |
pro (1.02407) | |
eye (1.02302) | |
lin (1.01922) | |
sug (1.01833) | |
mga (0.96123) | |
cbe (0.956938) | |
sme (0.91631) | |
fcc (0.791139) | |
ski (0.733676) | |
ece (0.687916) | |
fhi (0.678311) | |
ova (0.645661) | |
fco (0.628832) | |
cty (0.62448) | |
spl (0.572738) | |
ste (0.540833) | |
gul (0.532765) | |
lyg (0.532411) | |
ton (0.526501) | |
rec (0.519211) | |
thg (0.507164) | |
eep (0.490256) | |
nco (0.485201) | |
clu (0.478583) | |
ecc (0.46014) | |
bfe (0.449573) | |
amn (0.417711) | |
tes (0.415628) | |
ldo (0.38801) | |
ese (0.379507) | |
sag (0.36543) | |
mgm (0.360685) | |
eru (0.360144) | |
ebs (0.354904) | |
fty (0.351679) | |
mcp (0.341297) | |
cut (0.339847) | |
cki (0.330469) | |
tbr (0.308356) | |
isp (0.300752) | |
eje (0.296501) | |
fat (0.294855) | |
csk (0.281492) | |
cst (0.280073) | |
che (0.272628) | |
fce (0.271592) | |
ssp (0.271039) | |
nmm (0.265604) | |
bla (0.248694) | |
cly (0.241284) | |
pgl (0.236967) | |
med (0.232504) | |
mas (0.210305) | |
hea (0.204499) | |
jej (0.197844) | |
aor (0.195274) | |
col (0.195008) | |
cmu (0.186393) | |
sto (0.179824) | |
fbs (0.175346) | |
duo (0.172801) | |
nje (0.16592) | |
cje (0.165235) | |
lun (0.150489) | |
hyp (0.142837) | |
pty (0.142714) | |
lnt (0.142308) | |
ute (0.132784) | |
cbl (0.114797) | |
jca (0.11396) |
Expressed library(ies): 75 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
ret (2.57467) | |
tra (1.72329) | |
mgp (1.61476) | |
liv (1.31656) | |
kid (1.03788) | |
pro (1.02407) | |
eye (1.02302) | |
lin (1.01922) | |
sug (1.01833) | |
mga (0.96123) | |
cbe (0.956938) | |
sme (0.91631) | |
fcc (0.791139) | |
ski (0.733676) | |
ece (0.687916) | |
fhi (0.678311) | |
ova (0.645661) | |
fco (0.628832) | |
cty (0.62448) | |
spl (0.572738) | |
ste (0.540833) | |
gul (0.532765) | |
lyg (0.532411) | |
ton (0.526501) | |
rec (0.519211) | |
thg (0.507164) | |
eep (0.490256) | |
nco (0.485201) | |
clu (0.478583) | |
ecc (0.46014) | |
bfe (0.449573) | |
amn (0.417711) | |
tes (0.415628) | |
ldo (0.38801) | |
ese (0.379507) | |
sag (0.36543) | |
mgm (0.360685) | |
eru (0.360144) | |
ebs (0.354904) | |
fty (0.351679) | |
mcp (0.341297) | |
cut (0.339847) | |
cki (0.330469) | |
tbr (0.308356) | |
isp (0.300752) | |
eje (0.296501) | |
fat (0.294855) | |
csk (0.281492) | |
cst (0.280073) | |
che (0.272628) | |
fce (0.271592) | |
ssp (0.271039) | |
nmm (0.265604) | |
bla (0.248694) | |
cly (0.241284) | |
pgl (0.236967) | |
med (0.232504) | |
mas (0.210305) | |
hea (0.204499) | |
jej (0.197844) | |
aor (0.195274) | |
col (0.195008) | |
cmu (0.186393) | |
sto (0.179824) | |
fbs (0.175346) | |
duo (0.172801) | |
nje (0.16592) | |
cje (0.165235) | |
lun (0.150489) | |
hyp (0.142837) | |
pty (0.142714) | |
lnt (0.142308) | |
ute (0.132784) | |
cbl (0.114797) | |
jca (0.11396) |