Non-Coding RNA Search

Ss1.1-rret36_m13.5

Sequence:


               
               TTGCATCCAACTGTGATGAGCCAATGTATGTCAAGTTGGTGGAGGCCCTTTGTGCTGAGC
ACCAGATCAACCTAATTAAGGTCGACGACAACAAGAAACTAGGGGAATGGGTAGGCCTCT
GTAAAATTGACAGAGAGGGAAAACCCCGTAAAGTGGTTGGTTGCAGTTGTGTGGTGGTGA
AGGTAAGTCTTTTTTGTCGGGGGAGGAAAGTTGTGCTGGGTGACCATGCTTAACCCTGTA
TTGAATCTAAATGTTGAGAATATCTTAAAAGTAAAAGATGTATGATTCTCAACACACAAA
GAACGATTATTGTCTTAAGGGAAAGGGAAATGAACTGTAATTAAAGCCAGTCAATGAATC
TGCTTACCTGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGCATCCAACTGTGATGAGCCAATGTATGTCAAGTTGGTGGAGGCCCTTTGTGCTGAGC
ACCAGATCAACCTAATTAAGGTCGACGACAACAAGAAACTAGGGGAATGGGTAGGCCTCT
GTAAAATTGACAGAGAGGGAAAACCCCGTAAAGTGGTTGGTTGCAGTTGTGTGGTGGTGA
AGGTAAGTCTTTTTTGTCGGGGGAGGAAAGTTGTGCTGGGTGACCATGCTTAACCCTGTA
TTGAATCTAAATGTTGAGAATATCTTAAAAGTAAAAGATGTATGATTCTCAACACACAAA
GAACGATTATTGTCTTAAGGGAAAGGGAAATGAACTGTAATTAAAGCCAGTCAATGAATC
TGCTTACCTGAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|51460570|ref|XP_372926.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|51460570|ref|XP_372926.2|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               27-183, + strand, RNAz p=0.8197
               

               
               66-183, + strand, RNAz p=0.763111

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               27-183, + strand, RNAz p=0.8197
               

               
               66-183, + strand, RNAz p=0.763111

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-183, gnl|bosTau2|chr13 (31610330-31610151)
               

               
               1-183, gnl|canFam2|chr15 (13927763-13927350)
               

               
               1-183, gnl|dasNov1|scaffold_41237 (8000-7605)
               

               
               1-183, gnl|echTel1|scaffold_164599 (6069-6475)
               

               
               1-183, gnl|hg17|chr12 (131539156-131539529)
               

               
               1-183, gnl|Hg17|chr13 (36693236-36693057)
               

               
               1-183, gnl|loxAfr1|scaffold_113129 (4304-4704)
               

               
               1-183, gnl|Mm7|chr7 (52256663-52256845)
               

               
               1-183, gnl|oryCun1|scaffold_96663 (1231-1610)
               

               
               1-183, gnl|panTro1|chrUn_random (2213092-2212720)
               

               
               1-183, gnl|rheMac2|chr11 (133669269-133669635)
               

               
               1-183, gnl|rn3|chr3 (117807383-117807784)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-183, gnl|bosTau2|chr13 (31610330-31610151)
               

               
               1-183, gnl|canFam2|chr15 (13927763-13927350)
               

               
               1-183, gnl|dasNov1|scaffold_41237 (8000-7605)
               

               
               1-183, gnl|echTel1|scaffold_164599 (6069-6475)
               

               
               1-183, gnl|hg17|chr12 (131539156-131539529)
               

               
               1-183, gnl|Hg17|chr13 (36693236-36693057)
               

               
               1-183, gnl|loxAfr1|scaffold_113129 (4304-4704)
               

               
               1-183, gnl|Mm7|chr7 (52256663-52256845)
               

               
               1-183, gnl|oryCun1|scaffold_96663 (1231-1610)
               

               
               1-183, gnl|panTro1|chrUn_random (2213092-2212720)
               

               
               1-183, gnl|rheMac2|chr11 (133669269-133669635)
               

               
               1-183, gnl|rn3|chr3 (117807383-117807784)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               rec (0.17307)
               

               
               ret (0.128733)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.17307)
               

               
               ret (0.128733)

	27-183, + strand, RNAz p=0.8197
	66-183, + strand, RNAz p=0.763111

	1-183, gnl\|bosTau2\|chr13 (31610330-31610151)
	1-183, gnl\|canFam2\|chr15 (13927763-13927350)
	1-183, gnl\|dasNov1\|scaffold_41237 (8000-7605)
	1-183, gnl\|echTel1\|scaffold_164599 (6069-6475)
	1-183, gnl\|hg17\|chr12 (131539156-131539529)
	1-183, gnl\|Hg17\|chr13 (36693236-36693057)
	1-183, gnl\|loxAfr1\|scaffold_113129 (4304-4704)
	1-183, gnl\|Mm7\|chr7 (52256663-52256845)
	1-183, gnl\|oryCun1\|scaffold_96663 (1231-1610)
	1-183, gnl\|panTro1\|chrUn_random (2213092-2212720)
	1-183, gnl\|rheMac2\|chr11 (133669269-133669635)
	1-183, gnl\|rn3\|chr3 (117807383-117807784)