Non-Coding RNA Search

Ss1.1-rret36_n6.5

Sequence:


               
               ACCTTTTTATACTGTAGTACTTTGCTGTTAAATAACCCCGATACTGTATTTGCATTTATC
TTTTATCTTTTTAGTTCATCTACTTTCACTTACAAACAGTATTATGTAATAGAGGAAAAT
GGGAAAATGCAGATGAATTCAACTTTATTTTATATGTTGTATATATGTATACCTGCACTA
TTCATTTGGGTTTTGTTAAAGAGATAGTCACAAAGGGCTTATGAAAATCATTTTTGCATT
GATTAGAAAATCAAATAAGCAATCCTGTGACCGACTCATTTGTTTAATCTCAATTAGGCT
TATGAATCAAGGAGAATTATTGTGTATTTCAGTCATTTTGATTTGAGGTAACTCCAAATA
TAAAATTATTACATGTAGTGATGTCTCCCAGCCCTTACACGTGGGTATTTTTTAAGTGGA
CTTGTATGCTAATAATTCTAGACCAAAGTAAATATGGCAGAATATTTATACATGAAAAAA
TAATTTTGCAAATATTTTCTATAACTGTATTATTCGTTTAAAATGTTGATAGCTTGTGTT
AGTTTCAGGGAGGGGTGTATATTTTGATAAAAAATACTTGACTTTGTAATTCTGTATATT
CTATACAATTTATAGCAGAGCCGTTTTAAGACAGCCTTGTCACATTTTTTGTTAATTGTG
AAAATTTTATTATAAGTGATGTTTATGCATTGAGTACATAACGACCAACTAGAATTCAAG
TAAAGTGTGAACAGTGAACATACTGTATGCTGTACAAGATTATATTGTAATTTGCTGTTT
TCACATCTGTATTTTGGTTAGAAGATATTATTAAATGCAGATGTTAAGGGTTGGAAAAGT
CTAATTTTATTTTCAGAACTAATGAATATAAATTTGTTTTTGCTTGACTAAAATAGCTTA
TTCCTATGTTGTCTCTTTTTAAACATTCTAATGTTAATTCTCTCGGGCAGCCAAGCAGCT
CTTGCATCTGTGTGAGTCACAGCATTGTTTCACATATGATTCATTCAGTATATTCTGTTT
CCTTGTTTACATTCCATGGTACCTGCTTACATGCTTAGGACTCAAATGGAATATGACATT
AAAAAAAAGGCAGAATAAAAGAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCTTTTTATACTGTAGTACTTTGCTGTTAAATAACCCCGATACTGTATTTGCATTTATC
TTTTATCTTTTTAGTTCATCTACTTTCACTTACAAACAGTATTATGTAATAGAGGAAAAT
GGGAAAATGCAGATGAATTCAACTTTATTTTATATGTTGTATATATGTATACCTGCACTA
TTCATTTGGGTTTTGTTAAAGAGATAGTCACAAAGGGCTTATGAAAATCATTTTTGCATT
GATTAGAAAATCAAATAAGCAATCCTGTGACCGACTCATTTGTTTAATCTCAATTAGGCT
TATGAATCAAGGAGAATTATTGTGTATTTCAGTCATTTTGATTTGAGGTAACTCCAAATA
TAAAATTATTACATGTAGTGATGTCTCCCAGCCCTTACACGTGGGTATTTTTTAAGTGGA
CTTGTATGCTAATAATTCTAGACCAAAGTAAATATGGCAGAATATTTATACATGAAAAAA
TAATTTTGCAAATATTTTCTATAACTGTATTATTCGTTTAAAATGTTGATAGCTTGTGTT
AGTTTCAGGGAGGGGTGTATATTTTGATAAAAAATACTTGACTTTGTAATTCTGTATATT
CTATACAATTTATAGCAGAGCCGTTTTAAGACAGCCTTGTCACATTTTTTGTTAATTGTG
AAAATTTTATTATAAGTGATGTTTATGCATTGAGTACATAACGACCAACTAGAATTCAAG
TAAAGTGTGAACAGTGAACATACTGTATGCTGTACAAGATTATATTGTAATTTGCTGTTT
TCACATCTGTATTTTGGTTAGAAGATATTATTAAATGCAGATGTTAAGGGTTGGAAAAGT
CTAATTTTATTTTCAGAACTAATGAATATAAATTTGTTTTTGCTTGACTAAAATAGCTTA
TTCCTATGTTGTCTCTTTTTAAACATTCTAATGTTAATTCTCTCGGGCAGCCAAGCAGCT
CTTGCATCTGTGTGAGTCACAGCATTGTTTCACATATGATTCATTCAGTATATTCTGTTT
CCTTGTTTACATTCCATGGTACCTGCTTACATGCTTAGGACTCAAATGGAATATGACATT
AAAAAAAAGGCAGAATAAAAGAGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               742-901, - strand, RNAz p=0.646894

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               742-901, - strand, RNAz p=0.646894

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-1104, gnl|bosTau2|chr1 (79673258-79672164)
               

               
               3-1104, gnl|Hg17|chr3 (142649346-142650434)
               

               
               3-1104, gnl|Mm7|chr9 (96325265-96324080)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-1104, gnl|bosTau2|chr1 (79673258-79672164)
               

               
               3-1104, gnl|Hg17|chr3 (142649346-142650434)
               

               
               3-1104, gnl|Mm7|chr9 (96325265-96324080)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               fco (0.628832)
               

               
               ret (0.514933)
               

               
               cbe (0.239234)
               

               
               mgm (0.180343)
               

               
               sin (0.174948)
               

               
               eli (0.151814)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               kid (0.129735)
               

               
               med (0.116252)
               

               
               spc (0.113366)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.628832)
               

               
               ret (0.514933)
               

               
               cbe (0.239234)
               

               
               mgm (0.180343)
               

               
               sin (0.174948)
               

               
               eli (0.151814)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               kid (0.129735)
               

               
               med (0.116252)
               

               
               spc (0.113366)

	3-1104, gnl\|bosTau2\|chr1 (79673258-79672164)
	3-1104, gnl\|Hg17\|chr3 (142649346-142650434)
	3-1104, gnl\|Mm7\|chr9 (96325265-96324080)

	fco (0.628832)
	ret (0.514933)
	cbe (0.239234)
	mgm (0.180343)
	sin (0.174948)
	eli (0.151814)
	fat (0.147427)
	ski (0.146735)
	lin (0.145603)
	lnt (0.142308)
	ste (0.135208)
	kid (0.129735)
	med (0.116252)
	spc (0.113366)