Non-Coding RNA Search

Ss1.1-rret36_o12.5

Sequence:


               
               ACAGTATGACTGTCCACGCTCAAGTTCACTGCTCGGTGGCCCGTCCACGGTGCGGACCAC
TCTCGAAGGGGACGGAGCAGAGTTCGAGTCAGCATCCTAAGCACAAAACCGGTCTTTTTT
GTCATAGACCAAAAACGGTCATTCCAGCCTGTTGCCTGCCAGCCCCTTCTGGATGACTGA
TAGCAAATCCTGCTAAACCTCCATACCTTTCCAAGGACGAAACTACAGCGGATTCAAGTG
CTTTAATGACTATTTATGCTTTGACTGTGAGGTGTGGGGAGCAGTGCCATGGAGCATTTG
AATTTGGAACAAGAGGGGACCTCGATGGAAAAATTTGTATGATGGCCATTTATTTCAGAA
AGTTTGTATATAACAATTACCCGAGAGTCATTTCTATTTGCAAAGGGATTCATAACAAAG
CGAGTATCATTTTCTTGTCATTGGACCGTGCTTGTTAAATTTTAATGCGGCACCTTCAGA
ACTTGTCCTAATGGTGTCTTGTTGTGTCAGCACCAAGTATTTGTGCATTATTTGTGGATG
TTCCTTGTGACAGGAAGGTTCTTCTGTTGCCTTATTTATTTTTAATTGAAGTCTTTTCTT
CGTCTTTATGCTGGTATCAAAAATCATAAGAGAAACAGATCAACCGTGGAAGAACTAATC
TGTAATACTATGCAGTATTTGAAGTCCTGTCTATCGTTCAACCTGTCTCTTTATGTTAAC
TGGATTTCTGCATTAAACAACTGCCCCCTTGTTAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAGTATGACTGTCCACGCTCAAGTTCACTGCTCGGTGGCCCGTCCACGGTGCGGACCAC
TCTCGAAGGGGACGGAGCAGAGTTCGAGTCAGCATCCTAAGCACAAAACCGGTCTTTTTT
GTCATAGACCAAAAACGGTCATTCCAGCCTGTTGCCTGCCAGCCCCTTCTGGATGACTGA
TAGCAAATCCTGCTAAACCTCCATACCTTTCCAAGGACGAAACTACAGCGGATTCAAGTG
CTTTAATGACTATTTATGCTTTGACTGTGAGGTGTGGGGAGCAGTGCCATGGAGCATTTG
AATTTGGAACAAGAGGGGACCTCGATGGAAAAATTTGTATGATGGCCATTTATTTCAGAA
AGTTTGTATATAACAATTACCCGAGAGTCATTTCTATTTGCAAAGGGATTCATAACAAAG
CGAGTATCATTTTCTTGTCATTGGACCGTGCTTGTTAAATTTTAATGCGGCACCTTCAGA
ACTTGTCCTAATGGTGTCTTGTTGTGTCAGCACCAAGTATTTGTGCATTATTTGTGGATG
TTCCTTGTGACAGGAAGGTTCTTCTGTTGCCTTATTTATTTTTAATTGAAGTCTTTTCTT
CGTCTTTATGCTGGTATCAAAAATCATAAGAGAAACAGATCAACCGTGGAAGAACTAATC
TGTAATACTATGCAGTATTTGAAGTCCTGTCTATCGTTCAACCTGTCTCTTTATGTTAAC
TGGATTTCTGCATTAAACAACTGCCCCCTTGTTAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               431-583, + strand, RNAz p=0.704714

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               431-583, + strand, RNAz p=0.704714

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AY358773, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AY358773, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-755, gnl|bosTau2|chr11 (17004448-17005185)
               

               
               1-755, gnl|Hg17|chr2 (39856034-39856754)
               

               
               1-755, gnl|Mm7|chr17 (79298111-79298860)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-755, gnl|bosTau2|chr11 (17004448-17005185)
               

               
               1-755, gnl|Hg17|chr2 (39856034-39856754)
               

               
               1-755, gnl|Mm7|chr17 (79298111-79298860)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fco (0.628832)
               

               
               ret (0.257467)
               

               
               cbe (0.239234)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.628832)
               

               
               ret (0.257467)
               

               
               cbe (0.239234)

	1-755, gnl\|bosTau2\|chr11 (17004448-17005185)
	1-755, gnl\|Hg17\|chr2 (39856034-39856754)
	1-755, gnl\|Mm7\|chr17 (79298111-79298860)