Ss1.1-rret37_j6.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTCTATTTGCCAGGATTTGTGAAGTTTTTTGGAAACCTGGCTATCATGGATAGTCCTCAA CAAATCTGTGAGCGTTATCCTGTCTTTGTGGAGAAAGTCTTTGAAATGACAGAAAGTCAG GACCCCACCATGATTGGTGTAGCAGTGGACACGATTGGAATCCTGGGATCCAATGTTGAA GGAAAACAGGTTTTACAGAAAACAGGAACTCGCTTTGAACGATTGCTCATGAAAATAGGA TATCAAGCGAAGAATGCCTCAACAGAGCTCAAAATTAGGTGTTTGGATGCAGTTTCCTCT CTTTTTTATTTACCACCTGAACAGCAGACTGATGACCTCCTGAGGATGACAGAATCCTGG TTTTCTTCTTTATCTCGGGACCCGCTGGAGCTCTTCCGTGGCATCAGTAATCAACCTTTC CCTGAACTACACTGTGCTGCCTTAAAAGTGTTTACAGCCATTGCAAACCAACCCTGGGCT CAGAAACTTATGTTTAACAGTCCAGGTTTTGTAGAATATGTGATGGACCGGTCCGTAGAG CATGACAAAGCTTCAAAGGATGCCAAATATGAACTGGTAAAAGCGCTTGCCAATTCCAAG ACAATTGCAGAAATCTTTGGTAACCCAAATTATTTGAGGCTTAGAACTTACCTGAGTGAA GGTCCATACTATGTGAAACCTATTTCCACGACAGCAGTGGAAGGAGCAGAATGATTTCTT CTAGAGTCTAGACCATTTATTGACCAAAATTTCTCCTGAGGCATTTGACTCCATATGTGT TTTACAAAACAGAAACTTCCCTACCACCAAAATTATCATGGAATATCTGATGTAATCTTA CCATCAACATTTGTTGTGTTTCTACATTGAAATTCAGTGTAAAACCAGGAAAGCAGACAA ACTTGATCATAATTGAACCAGACAGTTCTCAGATTCCTTTGACTGCCTTAGTCCTTGCAA AAAGATGGAAGAAGTTTTATTTTCCCCCCAGAAAATTTTTGTGGACTTACTATATTATTT TAAAATCCACTTCATCTAAAATTGTTTGTGAATTCTCATCGCTTTTTTCTTGGTCCTTTT CCACCTTCTGATTCCACTTGCAAAGTCTTGGATATAAATTTTCTTTGAAAAACAAGTAAT ATGCAATTTTAAAATTATGTTCCCTATAATAAGAAGTACTTTTAACAAGTTTTTTTTTTA TTTTTTGTTACTATTATTCCTTTTAAAAATAAACAATCTTAAAAATAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTCTATTTGCCAGGATTTGTGAAGTTTTTTGGAAACCTGGCTATCATGGATAGTCCTCAA CAAATCTGTGAGCGTTATCCTGTCTTTGTGGAGAAAGTCTTTGAAATGACAGAAAGTCAG GACCCCACCATGATTGGTGTAGCAGTGGACACGATTGGAATCCTGGGATCCAATGTTGAA GGAAAACAGGTTTTACAGAAAACAGGAACTCGCTTTGAACGATTGCTCATGAAAATAGGA TATCAAGCGAAGAATGCCTCAACAGAGCTCAAAATTAGGTGTTTGGATGCAGTTTCCTCT CTTTTTTATTTACCACCTGAACAGCAGACTGATGACCTCCTGAGGATGACAGAATCCTGG TTTTCTTCTTTATCTCGGGACCCGCTGGAGCTCTTCCGTGGCATCAGTAATCAACCTTTC CCTGAACTACACTGTGCTGCCTTAAAAGTGTTTACAGCCATTGCAAACCAACCCTGGGCT CAGAAACTTATGTTTAACAGTCCAGGTTTTGTAGAATATGTGATGGACCGGTCCGTAGAG CATGACAAAGCTTCAAAGGATGCCAAATATGAACTGGTAAAAGCGCTTGCCAATTCCAAG ACAATTGCAGAAATCTTTGGTAACCCAAATTATTTGAGGCTTAGAACTTACCTGAGTGAA GGTCCATACTATGTGAAACCTATTTCCACGACAGCAGTGGAAGGAGCAGAATGATTTCTT CTAGAGTCTAGACCATTTATTGACCAAAATTTCTCCTGAGGCATTTGACTCCATATGTGT TTTACAAAACAGAAACTTCCCTACCACCAAAATTATCATGGAATATCTGATGTAATCTTA CCATCAACATTTGTTGTGTTTCTACATTGAAATTCAGTGTAAAACCAGGAAAGCAGACAA ACTTGATCATAATTGAACCAGACAGTTCTCAGATTCCTTTGACTGCCTTAGTCCTTGCAA AAAGATGGAAGAAGTTTTATTTTCCCCCCAGAAAATTTTTGTGGACTTACTATATTATTT TAAAATCCACTTCATCTAAAATTGTTTGTGAATTCTCATCGCTTTTTTCTTGGTCCTTTT CCACCTTCTGATTCCACTTGCAAAGTCTTGGATATAAATTTTCTTTGAAAAACAAGTAAT ATGCAATTTTAAAATTATGTTCCCTATAATAAGAAGTACTTTTAACAAGTTTTTTTTTTA TTTTTTGTTACTATTATTCCTTTTAAAAATAAACAATCTTAAAAATAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 457-575, + strand, RNAz p=0.824318 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 457-575, + strand, RNAz p=0.824318 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_005047, + |
| Aligned organism(s): 53 entry(ies) | More info |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
| 11-206, gnl|bosTau2|chr8 (61490968-61491163) | |
| 11-206, gnl|canFam2|chr11 (76892393-76892600) | |
| 11-206, gnl|danRer3|chr19 (7824485-7824258) | |
| 11-206, gnl|dasNov1|scaffold_15088 (16081-15874) | |
| 11-206, gnl|echTel1|scaffold_261781 (8998-9205) | |
| 11-206, gnl|fr1|chrUn (59040261-59040468) | |
| 11-206, gnl|galGal2|chr17 (2149197-2148989) | |
| 11-206, gnl|hg17|chr9 (120666320-120666527) | |
| 11-206, gnl|Hg17|chr9 (120666520-120666325) | |
| 11-206, gnl|loxAfr1|scaffold_33923 (8137-7931) | |
| 11-206, gnl|mm7|chr2 (34864943-34865149) | |
| 11-206, gnl|Mm7|chr2 (34865142-34864948) | |
| 11-206, gnl|monDom2|scaffold_38 (13033187-13033394) | |
| 11-206, gnl|oryCun1|scaffold_201334 (165946-166167) | |
| 11-206, gnl|panTro1|chr11 (105402778-105402985) | |
| 11-206, gnl|rheMac2|chr15 (15185240-15185033) | |
| 11-206, gnl|rn3|chr3 (13764761-13764967) | |
| 11-206, gnl|tetNig1|chr4 (4047446-4047651) | |
| 11-206, gnl|xenTro1|scaffold_95 (2178175-2178381) | |
| 293-455, gnl|bosTau2|chr8 (61493245-61493404) | |
| 293-455, gnl|canFam2|chr11 (76889271-76889442) | |
| 293-455, gnl|danRer3|chr19 (7826652-7826491) | |
| 293-455, gnl|dasNov1|scaffold_15088 (18143-17972) | |
| 293-455, gnl|echTel1|scaffold_261781 (7998-8161) | |
| 293-455, gnl|fr1|chrUn (59039823-59039989) | |
| 293-455, gnl|galGal2|chr17 (2150422-2150255) | |
| 293-455, gnl|hg17|chr9 (120662656-120662822) | |
| 293-455, gnl|Hg17|chr9 (120662831-120662672) | |
| 293-455, gnl|loxAfr1|scaffold_33923 (12201-12037) | |
| 293-455, gnl|mm7|chr2 (34861547-34861714) | |
| 293-455, gnl|Mm7|chr2 (34861722-34861564) | |
| 293-455, gnl|monDom2|scaffold_38 (13031428-13031594) | |
| 293-455, gnl|oryCun1|scaffold_191159 (86448-86269) | |
| 293-455, gnl|panTro1|chr11 (105399105-105399271) | |
| 293-455, gnl|rheMac2|chr15 (15189086-15188920) | |
| 293-455, gnl|rn3|chr3 (13761474-13761642) | |
| 293-455, gnl|tetNig1|chr4 (4047019-4047175) | |
| 293-455, gnl|xenTro1|scaffold_95 (2176736-2176892) | |
| 457-1042, gnl|bosTau2|chr8 (61496237-61496824) | |
| 457-1042, gnl|Hg17|chr9 (120659995-120659102) | |
| 457-1042, gnl|Mm7|chr2 (34860144-34859612) | |
| 1074-1237, gnl|bosTau2|chr8 (61496902-61497067) | |
| 1074-1237, gnl|canFam2|chr11 (76886284-76886541) | |
| 1074-1237, gnl|echTel1|scaffold_261781 (4952-5183) | |
| 1074-1237, gnl|hg17|chr9 (120658848-120659112) | |
| 1074-1237, gnl|Hg17|chr9 (120659042-120658886) | |
| 1074-1237, gnl|loxAfr1|scaffold_33923 (15810-15538) | |
| 1074-1237, gnl|mm7|chr2 (34859386-34859616) | |
| 1074-1237, gnl|Mm7|chr2 (34859576-34859424) | |
| 1074-1237, gnl|oryCun1|scaffold_191159 (88987-88752) | |
| 1074-1237, gnl|panTro1|chr11 (105395293-105395559) | |
| 1074-1237, gnl|rheMac2|chr15 (15192625-15192342) | |
| 1074-1237, gnl|rn3|chr3 (13758203-13758422) |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 11-206, gnl|bosTau2|chr8 (61490968-61491163) | |
| 11-206, gnl|canFam2|chr11 (76892393-76892600) | |
| 11-206, gnl|danRer3|chr19 (7824485-7824258) | |
| 11-206, gnl|dasNov1|scaffold_15088 (16081-15874) | |
| 11-206, gnl|echTel1|scaffold_261781 (8998-9205) | |
| 11-206, gnl|fr1|chrUn (59040261-59040468) | |
| 11-206, gnl|galGal2|chr17 (2149197-2148989) | |
| 11-206, gnl|hg17|chr9 (120666320-120666527) | |
| 11-206, gnl|Hg17|chr9 (120666520-120666325) | |
| 11-206, gnl|loxAfr1|scaffold_33923 (8137-7931) | |
| 11-206, gnl|mm7|chr2 (34864943-34865149) | |
| 11-206, gnl|Mm7|chr2 (34865142-34864948) | |
| 11-206, gnl|monDom2|scaffold_38 (13033187-13033394) | |
| 11-206, gnl|oryCun1|scaffold_201334 (165946-166167) | |
| 11-206, gnl|panTro1|chr11 (105402778-105402985) | |
| 11-206, gnl|rheMac2|chr15 (15185240-15185033) | |
| 11-206, gnl|rn3|chr3 (13764761-13764967) | |
| 11-206, gnl|tetNig1|chr4 (4047446-4047651) | |
| 11-206, gnl|xenTro1|scaffold_95 (2178175-2178381) | |
| 293-455, gnl|bosTau2|chr8 (61493245-61493404) | |
| 293-455, gnl|canFam2|chr11 (76889271-76889442) | |
| 293-455, gnl|danRer3|chr19 (7826652-7826491) | |
| 293-455, gnl|dasNov1|scaffold_15088 (18143-17972) | |
| 293-455, gnl|echTel1|scaffold_261781 (7998-8161) | |
| 293-455, gnl|fr1|chrUn (59039823-59039989) | |
| 293-455, gnl|galGal2|chr17 (2150422-2150255) | |
| 293-455, gnl|hg17|chr9 (120662656-120662822) | |
| 293-455, gnl|Hg17|chr9 (120662831-120662672) | |
| 293-455, gnl|loxAfr1|scaffold_33923 (12201-12037) | |
| 293-455, gnl|mm7|chr2 (34861547-34861714) | |
| 293-455, gnl|Mm7|chr2 (34861722-34861564) | |
| 293-455, gnl|monDom2|scaffold_38 (13031428-13031594) | |
| 293-455, gnl|oryCun1|scaffold_191159 (86448-86269) | |
| 293-455, gnl|panTro1|chr11 (105399105-105399271) | |
| 293-455, gnl|rheMac2|chr15 (15189086-15188920) | |
| 293-455, gnl|rn3|chr3 (13761474-13761642) | |
| 293-455, gnl|tetNig1|chr4 (4047019-4047175) | |
| 293-455, gnl|xenTro1|scaffold_95 (2176736-2176892) | |
| 457-1042, gnl|bosTau2|chr8 (61496237-61496824) | |
| 457-1042, gnl|Hg17|chr9 (120659995-120659102) | |
| 457-1042, gnl|Mm7|chr2 (34860144-34859612) | |
| 1074-1237, gnl|bosTau2|chr8 (61496902-61497067) | |
| 1074-1237, gnl|canFam2|chr11 (76886284-76886541) | |
| 1074-1237, gnl|echTel1|scaffold_261781 (4952-5183) | |
| 1074-1237, gnl|hg17|chr9 (120658848-120659112) | |
| 1074-1237, gnl|Hg17|chr9 (120659042-120658886) | |
| 1074-1237, gnl|loxAfr1|scaffold_33923 (15810-15538) | |
| 1074-1237, gnl|mm7|chr2 (34859386-34859616) | |
| 1074-1237, gnl|Mm7|chr2 (34859576-34859424) | |
| 1074-1237, gnl|oryCun1|scaffold_191159 (88987-88752) | |
| 1074-1237, gnl|panTro1|chr11 (105395293-105395559) | |
| 1074-1237, gnl|rheMac2|chr15 (15192625-15192342) | |
| 1074-1237, gnl|rn3|chr3 (13758203-13758422) |
| Expressed library(ies): 29 entry(ies) | More info |
| Expressed library(ies): 29 entry(ies) | Help | Less info |
| lin (0.728014) | |
| ova (0.516529) | |
| lyg (0.399308) | |
| kid (0.389206) | |
| rec (0.346141) | |
| vin (0.332557) | |
| mga (0.32041) | |
| liv (0.292569) | |
| fce (0.271592) | |
| sug (0.254582) | |
| tra (0.246184) | |
| mgp (0.230681) | |
| fli (0.202881) | |
| aor (0.195274) | |
| sag (0.182715) | |
| gul (0.177588) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| ski (0.146735) | |
| nmm (0.132802) | |
| ret (0.128733) | |
| thg (0.126791) | |
| ese (0.126502) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| cty (0.10408) | |
| jej (0.0989218) |
| Expressed library(ies): 29 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lin (0.728014) | |
| ova (0.516529) | |
| lyg (0.399308) | |
| kid (0.389206) | |
| rec (0.346141) | |
| vin (0.332557) | |
| mga (0.32041) | |
| liv (0.292569) | |
| fce (0.271592) | |
| sug (0.254582) | |
| tra (0.246184) | |
| mgp (0.230681) | |
| fli (0.202881) | |
| aor (0.195274) | |
| sag (0.182715) | |
| gul (0.177588) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| ski (0.146735) | |
| nmm (0.132802) | |
| ret (0.128733) | |
| thg (0.126791) | |
| ese (0.126502) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| cty (0.10408) | |
| jej (0.0989218) |